HL_9SYR_094

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

9SYR|1|S1|U|1371

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_094 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.1344

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9SYR|1|S1|G|1366
9SYR|1|S1|PSU|1367
9SYR|1|S1|U|1368
9SYR|1|S1|A|1369
9SYR|1|S1|A|1370
9SYR|1|S1|U|1371
9SYR|1|S1|U|1372
9SYR|1|S1|C|1373

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S17