HL_9SYR_103
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- GUUCGAACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SYR_103 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.134
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9SYR|1|S3|G|53
9SYR|1|S3|U|54
9SYR|1|S3|U|55
9SYR|1|S3|C|56
9SYR|1|S3|G|57
9SYR|1|S3|A|58
9SYR|1|S3|A|59
9SYR|1|S3|C|60
9SYR|1|S3|C|61
Current chains
- Chain S3
- tRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- 60S ribosomal protein L36a
- Chain LO
- 60S ribosomal protein L11
Coloring options: