HL_9T0Y_041

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9T0Y|1|a|A|196, 9T0Y|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T0Y_041 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1067

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9T0Y|1|a|G|194
9T0Y|1|a|A|195
9T0Y|1|a|A|196
9T0Y|1|a|A|197
9T0Y|1|a|C|198
9T0Y|1|a|A|199
9T0Y|1|a|U|200
9T0Y|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28