HL_9T0Z_008

3D structure

PDB id

9T0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

HPFcold Bound Hibernating C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T0Z_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1306

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9T0Z|1|A|G|317
9T0Z|1|A|A|318
9T0Z|1|A|C|319
9T0Z|1|A|U|320
9T0Z|1|A|G|321
9T0Z|1|A|A|322
9T0Z|1|A|G|323
9T0Z|1|A|A|324
9T0Z|1|A|C|325
9T0Z|1|A|A|326
9T0Z|1|A|C|327
9T0Z|1|A|G|328
9T0Z|1|A|G|329
9T0Z|1|A|C|330

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20