9T0Z Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9T0Z_001 | 1/A/11:21 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9T0Z_003 | 1/A/155:160 | GNRA | homologous HL_6CZR_074 NA | |
| HL_9T0Z_004 | 1/A/183:188 | GNRA related | geometric HL_8G9Z_003 HL_37569.4 | |
| HL_9T0Z_005 | 1/A/204:209 | No text annotation | ||
| HL_9T0Z_006 | 1/A/256:264 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_9T0Z_007 | 1/A/293:298 | GNRA | homologous HL_6CZR_078 NA | |
| HL_9T0Z_008 | 1/A/317:330 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_9T0Z_009 | 1/A/339:344 | UNCG | homologous HL_6CZR_080 NA | |
| HL_9T0Z_010 | 1/A/376:381 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9T0Z_011 | 1/A/416:421 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9T0Z_012 | 1/A/459:467 | GNRA with extra near cWW | geometric HL_9DE7_001 HL_87306.2 | |
| HL_9T0Z_013 | 1/A/519:524 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_9T0Z_014 | 1/A/614:620 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_9T0Z_015 | 1/A/686:695 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_9T0Z_016 | 1/A/723:728 | GNRA | homologous HL_6CZR_087 NA | |
| HL_9T0Z_017 | 1/A/783:793 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_9T0Z_018 | 1/A/837:842 | No text annotation | ||
| HL_9T0Z_019 | 1/A/858:863 | GNRA | homologous HL_6CZR_090 NA | |
| HL_9T0Z_020 | 1/A/893:898 | GNRA | homologous HL_6CZR_091 NA | |
| HL_9T0Z_021 | 1/A/959:968 | No text annotation | homologous HL_6CZR_092 NA | |
| HL_9T0Z_022 | 1/A/1008:1013 | No text annotation | homologous HL_6CZR_217 NA | |
| HL_9T0Z_024 | 1/A/1072:1077 | GNRA | homologous HL_6CZR_095 NA | |
| HL_9T0Z_025 | 1/A/1085:1092 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_9T0Z_026 | 1/A/1130:1137 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_9T0Z_027 | 1/A/1162:1168 | GNRA | homologous HL_6CZR_098 NA | |
| HL_9T0Z_028 | 1/A/1262:1267 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_9T0Z_029 | 1/A/1311:1320 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_9T0Z_030 | 1/A/1353:1363 | No text annotation | homologous HL_6CZR_101 NA | |
| HL_9T0Z_031 | 1/A/1446:1451 | No text annotation | ||
| HL_9T0Z_032 | 1/A/1512:1517 | GNRA | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9T0Z_002 | No text annotation | ||
| HL_9T0Z_023 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9T0Z_001 | 1/A/29:31, 1/A/549:550 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_9T0Z_002 | 1/A/43:44, 1/A/393:395 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9T0Z_003 | 1/A/46:51, 1/A/356:358 | No text annotation | geometric IL_8B0X_003 IL_32983.2 | |
| IL_9T0Z_004 | 1/A/53:55, 1/A/353:354 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9T0Z_005 | 1/A/62:65, 1/A/100:101 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_9T0Z_006 | 1/A/66:68, 1/A/96:99 | No text annotation | geometric IL_8B0X_006 IL_82096.1 | |
| IL_9T0Z_007 | 1/A/69:72, 1/A/94:95 | No text annotation | geometric IL_8B0X_007 IL_87975.1 | |
| IL_9T0Z_008 | 1/A/74:75, 1/A/90:92 | No text annotation | geometric IL_9FN3_004 IL_28408.3 | |
| IL_9T0Z_009 | 1/A/125:128, 1/A/228:230 | No text annotation | geometric IL_8B0X_009 IL_76400.2 | |
| IL_9T0Z_010 | 1/A/129:133, 1/A/224:227 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_9T0Z_011 | 1/A/141:143, 1/A/173:175 | No text annotation | geometric IL_8B0X_011 IL_10892.3 | |
| IL_9T0Z_012 | 1/A/144:150, 1/A/165:172 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_9T0Z_013 | 1/A/200:204, 1/A/209:211 | No text annotation | ||
| IL_9T0Z_014 | 1/A/239:244, 1/A/274:281 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_9T0Z_015 | 1/A/246:249, 1/A/271:272 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_9T0Z_016 | 1/A/289:290, 1/A/301:305 | C-loop | homologous IL_6CZR_125 NA | |
| IL_9T0Z_017 | 1/A/364:366, 1/A/389:390 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9T0Z_018 | 1/A/368:372, 1/A/386:387 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9T0Z_019 | 1/A/372:373, 1/A/384:386 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9T0Z_020 | 1/A/406:413, 1/A/424:430 | No text annotation | geometric IL_8B0X_019 IL_62329.1 | |
| IL_9T0Z_021 | 1/A/437:439, 1/A/489:494 | No text annotation | geometric IL_8B0X_020 IL_02111.1 | |
| IL_9T0Z_022 | 1/A/443:447, 1/A/480:485 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_9T0Z_023 | 1/A/447:453, 1/A/473:480 | No text annotation | ||
| IL_9T0Z_025 | 1/A/501:508, 1/A/537:538 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_9T0Z_026 | 1/A/512:518, 1/A/525:533 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_9T0Z_027 | 1/A/566:572, 1/A/876:877 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_9T0Z_028 | 1/A/577:581, 1/A/754:758 | tSH-tWH-tHS | homologous IL_6CZR_135 NA | |
| IL_9T0Z_029 | 1/A/591:593, 1/A/641:642 | Major groove platform | homologous IL_6CZR_407 NA | |
| IL_9T0Z_030 | 1/A/594:595, 1/A/637:640 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_9T0Z_031 | 1/A/598:600, 1/A/632:634 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_01003.5 | |
| IL_9T0Z_032 | 1/A/602:609, 1/A/625:630 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_9T0Z_033 | 1/A/651:652, 1/A/748:751 | No text annotation | geometric IL_8B0X_030 IL_74641.3 | |
| IL_9T0Z_034 | 1/A/655:656, 1/A/743:745 | No text annotation | geometric IL_9H3G_071 IL_15011.4 | |
| IL_9T0Z_035 | 1/A/659:663, 1/A/737:740 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_9T0Z_036 | 1/A/670:674, 1/A/710:714 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_9T0Z_037 | 1/A/681:685, 1/A/696:703 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_9T0Z_038 | 1/A/771:775, 1/A/801:802 | Left turn | homologous IL_6CZR_144 NA | |
| IL_9T0Z_039 | 1/A/776:780, 1/A/796:800 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_9T0Z_040 | 1/A/883:890, 1/A/901:906 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_9T0Z_041 | 1/A/918:919, 1/A/1390:1392 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_9T0Z_042 | 1/A/921:923, 1/A/1387:1388 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_9T0Z_043 | 1/A/929:931, 1/A/1377:1381 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_9T0Z_044 | 1/A/949:950, 1/A/1223:1225 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_9T0Z_045 | 1/A/989:993, 1/A/1040:1041 | No text annotation | geometric IL_8B0X_042 IL_49794.1 | |
| IL_9T0Z_046 | 1/A/994:995, 1/A/1037:1039 | Single stack bend | geometric IL_8P9A_298 IL_15011.4 | |
| IL_9T0Z_048 | 1/A/1044:1046, 1/A/1205:1206 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_9T0Z_049 | 1/A/1048:1052, 1/A/1201:1203 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9T0Z_050 | 1/A/1053:1054, 1/A/1196:1200 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_9T0Z_051 | 1/A/1056:1057, 1/A/1192:1194 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_9T0Z_052 | 1/A/1057:1059, 1/A/1190:1192 | Isolated non-canonical cWW pair | homologous IL_6CZR_157 NA | |
| IL_9T0Z_053 | 1/A/1120:1124, 1/A/1141:1146 | No text annotation | geometric IL_8B0X_050 IL_38603.1 | |
| IL_9T0Z_054 | 1/A/1125:1128, 1/A/1139:1140 | No text annotation | geometric IL_8B0X_051 IL_87975.1 | |
| IL_9T0Z_055 | 1/A/1155:1158, 1/A/1172:1178 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9T0Z_056 | 1/A/1243:1250, 1/A/1281:1288 | No text annotation | ||
| IL_9T0Z_057 | 1/A/1252:1255, 1/A/1274:1279 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_9T0Z_058 | 1/A/1256:1260, 1/A/1269:1273 | No text annotation | geometric IL_8OI5_069 IL_15190.3 | |
| IL_9T0Z_059 | 1/A/1300:1305, 1/A/1326:1331 | No text annotation | homologous IL_6CZR_164 NA | |
| IL_9T0Z_060 | 1/A/1396:1398, 1/A/1498:1501 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_9T0Z_061 | 1/A/1398:1401, 1/A/1494:1498 | No text annotation | homologous IL_6CZR_368 NA | |
| IL_9T0Z_062 | 1/A/1402:1404, 1/A/1491:1493 | No text annotation | geometric IL_8B0X_177 IL_01003.5 | |
| IL_9T0Z_063 | 1/A/1404:1406, 1/A/1488:1491 | No text annotation | ||
| IL_9T0Z_064 | 1/A/1409:1411, 1/A/1483:1485 | Isolated non-canonical cWW pair | homologous IL_6CZR_411 NA | |
| IL_9T0Z_065 | 1/A/1413:1416, 1/A/1478:1481 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_9T0Z_066 | 1/A/1418:1420, 1/A/1474:1476 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.5 | |
| IL_9T0Z_067 | 1/A/1427:1432, 1/A/1463:1467 | No text annotation | geometric IL_8B0X_062 IL_47352.3 | |
| IL_9T0Z_068 | 1/A/1432:1434, 1/A/1461:1463 | Isolated non-canonical cWW pair | homologous IL_6CZR_171 NA | |
| IL_9T0Z_069 | 1/A/1437:1439, 1/A/1457:1458 | No text annotation | geometric IL_8GLP_254 IL_34520.4 | |
| IL_9T0Z_070 | 1/A/1442:1445, 1/A/1452:1454 | No text annotation | geometric IL_8B0X_064 IL_05502.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9T0Z_024 | No text annotation | ||
| IL_9T0Z_047 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9T0Z_001 | 1/A/45:46, 1/A/358:364, 1/A/390:392 | No text annotation | geometric J3_8B0X_001 J3_58657.2 | |
| J3_9T0Z_002 | 1/A/45:51, 1/A/356:364, 1/A/390:392 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_9T0Z_003 | 1/A/583:585, 1/A/648:651, 1/A/751:752 | No text annotation | ||
| J3_9T0Z_004 | 1/A/583:585, 1/A/648:652, 1/A/748:752 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_9T0Z_005 | 1/A/669:670, 1/A/714:722, 1/A/729:731 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_9T0Z_006 | 1/A/823:826, 1/A/853:857, 1/A/864:870 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_9T0Z_007 | 1/A/932:935, 1/A/1341:1347, 1/A/1369:1376 | No text annotation | homologous J3_6CZR_061 NA | |
| J3_9T0Z_008 | 1/A/939:942, 1/A/1232:1234, 1/A/1334:1337 | No text annotation | homologous J3_6CZR_019 NA | |
| J3_9T0Z_009 | 1/A/951:958, 1/A/969:980, 1/A/1218:1222 | No text annotation | geometric J3_8B0X_007 J3_88451.2 | |
| J3_9T0Z_010 | 1/A/986:989, 1/A/1041:1043, 1/A/1207:1212 | No text annotation | geometric J3_8B0X_008 J3_84394.1 | |
| J3_9T0Z_011 | 1/A/986:993, 1/A/1040:1043, 1/A/1207:1212 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_9T0Z_013 | 1/A/1059:1064, 1/A/1103:1109, 1/A/1184:1190 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_9T0Z_014 | 1/A/1069:1070, 1/A/1079:1082, 1/A/1095:1098 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_9T0Z_015 | 1/A/1112:1114, 1/A/1152:1155, 1/A/1178:1181 | No text annotation | geometric J3_8B0X_012 J3_82365.6 | |
| J3_9T0Z_016 | 1/A/1112:1114, 1/A/1152:1158, 1/A/1172:1181 | No text annotation | homologous J3_6CZR_025 NA | |
| J3_9T0Z_017 | 1/A/1234:1238, 1/A/1293:1300, 1/A/1331:1334 | No text annotation | homologous J3_6CZR_026 NA | |
| J4_9T0Z_001 | 1/A/112:119, 1/A/236:237, 1/A/283:286, 1/A/308:309 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_9T0Z_002 | 1/A/140:141, 1/A/175:181, 1/A/190:195, 1/A/216:217 | No text annotation | ||
| J4_9T0Z_003 | 1/A/572:574, 1/A/761:766, 1/A/807:818, 1/A/875:876 | No text annotation | homologous J4_6CZR_013 NA | |
| J5_9T0Z_001 | 1/A/35:38, 1/A/400:403, 1/A/433:437, 1/A/494:497, 1/A/542:545 | No text annotation | ||
| J5_9T0Z_002 | 1/A/35:38, 1/A/400:403, 1/A/433:439, 1/A/489:497, 1/A/542:545 | No text annotation | ||
| J5_9T0Z_003 | 1/A/57:60, 1/A/103:110, 1/A/311:313, 1/A/334:336, 1/A/347:351 | No text annotation | homologous J5_6CZR_021 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9T0Z_012 | No text annotation |
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