HL_9T1J_010

3D structure

PDB id

9T1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-RlmE strain, PTC class 9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9T1J|1|a|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T1J|1|a|C|2248
9T1J|1|a|U|2249
9T1J|1|a|G|2250
9T1J|1|a|OMG|2251
9T1J|1|a|G|2252
9T1J|1|a|G|2253
9T1J|1|a|C|2254
9T1J|1|a|G|2255
9T1J|1|a|G|2256

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27