HL_9T4R_004

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGCAUG

Length

6 nucleotides

Bulged bases

9T4R|1|A|C|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_004 not in the Motif Atlas

Geometric match to HL_4XCO_003

Geometric discrepancy: 0.2591

The information below is about HL_4XCO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64374.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9T4R|1|A|C|193
9T4R|1|A|G|194
9T4R|1|A|C|195
9T4R|1|A|A|196
9T4R|1|A|U|197
9T4R|1|A|G|198

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17