9T4R Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9T4R_001 | 1/A/13:23 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9T4R_003 | 1/A/158:163 | GNRA | homologous HL_6CZR_074 NA | |
| HL_9T4R_004 | 1/A/193:198 | No text annotation | geometric HL_4XCO_003 HL_64374.2 | |
| HL_9T4R_005 | 1/A/218:222 | Mini UNCG | geometric HL_4V9F_021 HL_90436.4 | |
| HL_9T4R_006 | 1/A/267:275 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_9T4R_007 | 1/A/304:309 | GNRA | homologous HL_6CZR_078 NA | |
| HL_9T4R_008 | 1/A/328:341 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_9T4R_009 | 1/A/350:355 | UNCG | homologous HL_6CZR_080 NA | |
| HL_9T4R_010 | 1/A/387:392 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9T4R_011 | 1/A/427:432 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9T4R_012 | 1/A/470:479 | No text annotation | geometric HL_4TUE_223 HL_38491.3 | |
| HL_9T4R_013 | 1/A/530:535 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_9T4R_014 | 1/A/625:631 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_9T4R_015 | 1/A/697:706 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_9T4R_016 | 1/A/734:739 | GNRA | homologous HL_6CZR_087 NA | |
| HL_9T4R_017 | 1/A/794:804 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_9T4R_018 | 1/A/849:854 | GNRA | geometric HL_8DP3_003 HL_34789.5 | |
| HL_9T4R_019 | 1/A/871:876 | GNRA | homologous HL_6CZR_090 NA | |
| HL_9T4R_020 | 1/A/906:911 | GNRA | homologous HL_6CZR_091 NA | |
| HL_9T4R_021 | 1/A/972:981 | No text annotation | homologous HL_6CZR_092 NA | |
| HL_9T4R_022 | 1/A/1021:1026 | No text annotation | homologous HL_6CZR_217 NA | |
| HL_9T4R_024 | 1/A/1087:1092 | GNRA | homologous HL_6CZR_095 NA | |
| HL_9T4R_025 | 1/A/1100:1107 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_9T4R_026 | 1/A/1144:1151 | No text annotation | ||
| HL_9T4R_027 | 1/A/1175:1181 | GNRA | homologous HL_6CZR_098 NA | |
| HL_9T4R_028 | 1/A/1275:1280 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_9T4R_029 | 1/A/1324:1333 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_9T4R_030 | 1/A/1366:1376 | No text annotation | homologous HL_6CZR_101 NA | |
| HL_9T4R_031 | 1/A/1460:1464 | Mini UNCG | geometric HL_4V9F_021 HL_90436.4 | |
| HL_9T4R_032 | 1/A/1526:1531 | GNRA | homologous HL_6CZR_103 NA | |
| HL_9T4R_033 | 1/Z/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_9T4R_034 | 1/Z/31:39 | tRNA anticodon loop | homologous HL_9MTS_102 HL_81376.3 | |
| HL_9T4R_035 | 1/Z/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_33597.4 | |
| HL_9T4R_036 | 1/a/67:74 | No text annotation | geometric HL_4WF9_001 HL_08550.2 | |
| HL_9T4R_037 | 1/a/87:95 | Pseudoknot geometry | geometric HL_4WF9_002 HL_00911.3 | |
| HL_9T4R_038 | 1/a/122:127 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_9T4R_039 | 1/a/136:143 | GNRA with tandem sheared | geometric HL_5AOX_001 HL_98423.4 | |
| HL_9T4R_040 | 1/a/159:169 | No text annotation | ||
| HL_9T4R_041 | 1/a/197:204 | No text annotation | homologous HL_7A0S_006 HL_48677.2 | |
| HL_9T4R_042 | 1/a/228:233 | No text annotation | homologous HL_7A0S_007 HL_91813.1 | |
| HL_9T4R_043 | 1/a/249:255 | No text annotation | homologous HL_7A0S_008 HL_76371.3 | |
| HL_9T4R_045 | 1/a/348:355 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.4 | |
| HL_9T4R_046 | 1/a/362:366 | No text annotation | geometric HL_9AXU_006 HL_75660.9 | |
| HL_9T4R_047 | 1/a/370:378 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.5 | |
| HL_9T4R_048 | 1/a/428:438 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_9T4R_049 | 1/a/456:463 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_9T4R_050 | 1/a/508:513 | GNRA | homologous HL_7A0S_015 HL_34789.5 | |
| HL_9T4R_051 | 1/a/533:538 | GNRA | homologous HL_7A0S_016 HL_34789.5 | |
| HL_9T4R_052 | 1/a/587:594 | No text annotation | geometric HL_4WF9_017 HL_50318.1 | |
| HL_9T4R_053 | 1/a/609:618 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.4 | |
| HL_9T4R_054 | 1/a/655:661 | No text annotation | geometric HL_8B0X_024 HL_34789.5 | |
| HL_9T4R_055 | 1/a/674:679 | GNRA | homologous HL_7A0S_020 HL_34789.5 | |
| HL_9T4R_056 | 1/a/686:692 | GNRA | geometric HL_9DFE_019 HL_34789.5 | |
| HL_9T4R_057 | 1/a/757:764 | No text annotation | geometric HL_8B0X_052 HL_98423.4 | |
| HL_9T4R_058 | 1/a/789:798 | No text annotation | homologous HL_7A0S_022 HL_50204.2 | |
| HL_9T4R_059 | 1/a/824:830 | No text annotation | geometric HL_4WF9_024 HL_79773.1 | |
| HL_9T4R_060 | 1/a/871:876 | No text annotation | homologous HL_7A0S_024 HL_27530.2 | |
| HL_9T4R_061 | 1/a/999:1006 | GNRA | homologous HL_7A0S_026 HL_34789.5 | |
| HL_9T4R_062 | 1/a/1022:1029 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_9T4R_064 | 1/a/1214:1218 | No text annotation | ||
| HL_9T4R_065 | 1/a/1260:1265 | GNRA | homologous HL_7A0S_031 HL_34789.5 | |
| HL_9T4R_066 | 1/a/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.4 | |
| HL_9T4R_067 | 1/a/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_9T4R_068 | 1/a/1400:1405 | GNRA variation | homologous HL_7A0S_034 HL_34789.5 | |
| HL_9T4R_069 | 1/a/1426:1435 | No text annotation | homologous HL_7A0S_035 HL_77449.2 | |
| HL_9T4R_070 | 1/a/1495:1505 | No text annotation | ||
| HL_9T4R_071 | 1/a/1535:1541 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_9T4R_073 | 1/a/1610:1613 | Mini UNCG | homologous HL_7A0S_039 HL_90436.4 | |
| HL_9T4R_074 | 1/a/1654:1661 | No text annotation | homologous HL_7A0S_040 HL_28592.3 | |
| HL_9T4R_075 | 1/a/1671:1679 | GNRA with extra cWW | geometric HL_4WF9_039 HL_87268.3 | |
| HL_9T4R_076 | 1/a/1733:1738 | UNCG | homologous HL_7A0S_042 HL_61337.5 | |
| HL_9T4R_077 | 1/a/1760:1765 | GNRA | geometric HL_7A0S_016 HL_34789.5 | |
| HL_9T4R_078 | 1/a/1777:1781 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_9T4R_079 | 1/a/1802:1812 | No text annotation | geometric HL_8B0X_073 HL_87681.2 | |
| HL_9T4R_080 | 1/a/1831:1836 | GNRA | homologous HL_7A0S_046 HL_93535.3 | |
| HL_9T4R_081 | 1/a/1893:1898 | No text annotation | ||
| HL_9T4R_082 | 1/a/1935:1945 | No text annotation | geometric HL_8OI5_044 HL_82185.2 | |
| HL_9T4R_083 | 1/a/1974:1982 | No text annotation | homologous HL_7A0S_048 HL_33350.1 | |
| HL_9T4R_084 | 1/a/2052:2061 | No text annotation | homologous HL_7A0S_049 HL_78372.2 | |
| HL_9T4R_086 | 1/a/2234:2240 | No text annotation | geometric HL_8B0X_079 HL_42293.1 | |
| HL_9T4R_087 | 1/a/2273:2281 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_9T4R_088 | 1/a/2289:2301 | No text annotation | homologous HL_7A0S_053 HL_02042.2 | |
| HL_9T4R_089 | 1/a/2329:2337 | No text annotation | geometric HL_8B0X_101 HL_02452.2 | |
| HL_9T4R_090 | 1/a/2349:2356 | Pseudoknot geometry | homologous HL_7A0S_055 HL_52651.3 | |
| HL_9T4R_091 | 1/a/2380:2387 | GNRA with extra cWW | homologous HL_7A0S_056 HL_87268.3 | |
| HL_9T4R_092 | 1/a/2399:2404 | GNRA | homologous HL_7A0S_057 HL_34789.5 | |
| HL_9T4R_093 | 1/a/2429:2438 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_9T4R_094 | 1/a/2496:2504 | No text annotation | homologous HL_7A0S_059 HL_52011.2 | |
| HL_9T4R_095 | 1/a/2553:2560 | GNRA variation | homologous HL_7A0S_060 HL_46665.3 | |
| HL_9T4R_096 | 1/a/2576:2582 | LSU A loop | homologous HL_7A0S_061 HL_48677.2 | |
| HL_9T4R_097 | 1/a/2619:2624 | GNRA | homologous HL_7A0S_062 HL_34789.5 | |
| HL_9T4R_098 | 1/a/2683:2688 | GNRA | homologous HL_7A0S_063 HL_34789.5 | |
| HL_9T4R_099 | 1/a/2726:2731 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.3 | |
| HL_9T4R_100 | 1/a/2770:2784 | No text annotation | homologous HL_7A0S_065 HL_53269.3 | |
| HL_9T4R_101 | 1/a/2817:2822 | UNCG | geometric HL_5Y85_004 HL_61337.5 | |
| HL_9T4R_102 | 1/a/2837:2845 | No text annotation | homologous HL_7A0S_067 HL_37889.2 | |
| HL_9T4R_103 | 1/a/2874:2879 | GNRA | homologous HL_7A0S_068 HL_34789.5 | |
| HL_9T4R_104 | 1/b/32:46 | No text annotation | geometric HL_9E6Q_068 HL_97756.4 | |
| HL_9T4R_105 | 1/b/36:42 | No text annotation | homologous HL_4V9F_071 HL_59381.3 | |
| HL_9T4R_106 | 1/b/83:88 | No text annotation | geometric HL_9DFE_006 HL_91813.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9T4R_002 | No text annotation | ||
| HL_9T4R_023 | No text annotation | ||
| HL_9T4R_044 | No text annotation | ||
| HL_9T4R_063 | No text annotation | ||
| HL_9T4R_072 | No text annotation | ||
| HL_9T4R_085 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9T4R_001 | 1/A/31:33, 1/A/560:561 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_9T4R_002 | 1/A/45:46, 1/A/404:406 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9T4R_003 | 1/A/48:53, 1/A/367:369 | No text annotation | geometric IL_8B0X_003 IL_32983.2 | |
| IL_9T4R_004 | 1/A/55:57, 1/A/364:365 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9T4R_005 | 1/A/64:67, 1/A/102:103 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_9T4R_006 | 1/A/68:70, 1/A/99:101 | Isolated non-canonical cWW pair | homologous IL_6CZR_118 NA | |
| IL_9T4R_007 | 1/A/72:78, 1/A/91:97 | No text annotation | ||
| IL_9T4R_008 | 1/A/128:131, 1/A/239:240 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_9T4R_009 | 1/A/132:136, 1/A/235:238 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_9T4R_010 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_9T4R_011 | 1/A/250:255, 1/A/285:292 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_9T4R_012 | 1/A/257:260, 1/A/282:283 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_9T4R_013 | 1/A/300:301, 1/A/312:316 | C-loop | homologous IL_6CZR_125 NA | |
| IL_9T4R_014 | 1/A/375:377, 1/A/400:401 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9T4R_015 | 1/A/379:383, 1/A/397:398 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9T4R_016 | 1/A/383:384, 1/A/395:397 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9T4R_017 | 1/A/417:424, 1/A/435:441 | No text annotation | geometric IL_4LFB_017 IL_62329.1 | |
| IL_9T4R_018 | 1/A/454:458, 1/A/491:496 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_9T4R_019 | 1/A/458:464, 1/A/485:491 | No text annotation | ||
| IL_9T4R_020 | 1/A/512:519, 1/A/548:549 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_9T4R_021 | 1/A/523:529, 1/A/536:544 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_9T4R_022 | 1/A/577:583, 1/A/889:890 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_9T4R_023 | 1/A/588:592, 1/A/765:769 | tSH-tWH-tHS | homologous IL_6CZR_135 NA | |
| IL_9T4R_024 | 1/A/602:604, 1/A/652:653 | Major groove platform | homologous IL_6CZR_407 NA | |
| IL_9T4R_025 | 1/A/605:606, 1/A/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_9T4R_026 | 1/A/612:613, 1/A/640:642 | Single bulged U | geometric IL_8P9A_372 IL_97561.6 | |
| IL_9T4R_027 | 1/A/613:620, 1/A/636:640 | No text annotation | geometric IL_8B0X_029 IL_04211.1 | |
| IL_9T4R_028 | 1/A/662:663, 1/A/759:762 | No text annotation | geometric IL_8B0X_030 IL_74641.3 | |
| IL_9T4R_029 | 1/A/665:666, 1/A/755:757 | Major groove platform | homologous IL_6CZR_140 NA | |
| IL_9T4R_030 | 1/A/670:674, 1/A/748:751 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_9T4R_031 | 1/A/681:685, 1/A/721:725 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_9T4R_032 | 1/A/692:696, 1/A/707:714 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_9T4R_033 | 1/A/782:787, 1/A/811:813 | No text annotation | geometric IL_8GLP_241 IL_31359.2 | |
| IL_9T4R_034 | 1/A/787:791, 1/A/807:811 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_9T4R_035 | 1/A/896:903, 1/A/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_9T4R_036 | 1/A/931:932, 1/A/1403:1405 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_9T4R_037 | 1/A/934:936, 1/A/1400:1401 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_9T4R_038 | 1/A/942:944, 1/A/1390:1394 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_9T4R_039 | 1/A/962:963, 1/A/1236:1238 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_9T4R_040 | 1/A/1002:1009, 1/A/1050:1056 | No text annotation | ||
| IL_9T4R_042 | 1/A/1059:1061, 1/A/1218:1219 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_9T4R_043 | 1/A/1063:1067, 1/A/1214:1216 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9T4R_044 | 1/A/1068:1069, 1/A/1209:1213 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_9T4R_045 | 1/A/1071:1072, 1/A/1205:1207 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_9T4R_046 | 1/A/1072:1074, 1/A/1203:1205 | Isolated non-canonical cWW pair | homologous IL_6CZR_157 NA | |
| IL_9T4R_047 | 1/A/1135:1138, 1/A/1155:1159 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_9T4R_048 | 1/A/1140:1143, 1/A/1152:1153 | No text annotation | geometric IL_8B0X_051 IL_87975.1 | |
| IL_9T4R_049 | 1/A/1168:1171, 1/A/1185:1191 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9T4R_050 | 1/A/1257:1263, 1/A/1294:1300 | No text annotation | homologous IL_6CZR_160 NA | |
| IL_9T4R_051 | 1/A/1265:1268, 1/A/1287:1292 | No text annotation | ||
| IL_9T4R_052 | 1/A/1269:1273, 1/A/1282:1286 | No text annotation | geometric IL_8B0X_055 IL_87767.3 | |
| IL_9T4R_053 | 1/A/1313:1318, 1/A/1339:1344 | No text annotation | homologous IL_6CZR_164 NA | |
| IL_9T4R_054 | 1/A/1409:1411, 1/A/1512:1515 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_9T4R_055 | 1/A/1411:1414, 1/A/1508:1512 | No text annotation | homologous IL_6CZR_368 NA | |
| IL_9T4R_056 | 1/A/1415:1417, 1/A/1505:1507 | No text annotation | geometric IL_8B0X_177 IL_01003.5 | |
| IL_9T4R_057 | 1/A/1417:1419, 1/A/1502:1505 | No text annotation | ||
| IL_9T4R_058 | 1/A/1422:1424, 1/A/1497:1499 | Isolated non-canonical cWW pair | homologous IL_6CZR_411 NA | |
| IL_9T4R_059 | 1/A/1426:1429, 1/A/1492:1495 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_9T4R_060 | 1/A/1434:1437, 1/A/1484:1487 | No text annotation | geometric IL_8B0X_103 IL_15225.3 | |
| IL_9T4R_061 | 1/A/1440:1445, 1/A/1477:1481 | No text annotation | geometric IL_8B0X_062 IL_47352.3 | |
| IL_9T4R_062 | 1/A/1445:1447, 1/A/1475:1477 | Isolated non-canonical cWW pair | homologous IL_6CZR_171 NA | |
| IL_9T4R_063 | 1/A/1450:1453, 1/A/1470:1472 | No text annotation | geometric IL_9DFE_082 IL_87316.3 | |
| IL_9T4R_064 | 1/A/1455:1458, 1/A/1466:1468 | No text annotation | geometric IL_8B0X_064 IL_05502.1 | |
| IL_9T4R_065 | 1/A/1543:1546, 1/X/7:9 | No text annotation | geometric IL_7SZU_003 IL_75527.3 | |
| IL_9T4R_066 | 1/a/24:30, 1/a/555:561 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.2 | |
| IL_9T4R_067 | 1/a/36:37, 1/a/488:490 | Single bulged A | homologous IL_7A0S_002 IL_14190.3 | |
| IL_9T4R_068 | 1/a/43:44, 1/a/480:482 | Minor groove platform | homologous IL_7A0S_003 IL_34520.4 | |
| IL_9T4R_069 | 1/a/56:76, 1/a/109:113 | No text annotation | ||
| IL_9T4R_070 | 1/a/81:85, 1/a/97:104 | Kink-turn | geometric IL_6UFG_001 IL_71972.2 | |
| IL_9T4R_071 | 1/a/152:153, 1/a/175:177 | Single bulged A | geometric IL_4WF9_006 IL_14190.3 | |
| IL_9T4R_072 | 1/a/186:187, 1/a/215:217 | Single stack bend | homologous IL_7A0S_005 IL_15011.4 | |
| IL_9T4R_073 | 1/a/190:197, 1/a/204:212 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.2 | |
| IL_9T4R_074 | 1/a/241:248, 1/a/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_62167.4 | |
| IL_9T4R_075 | 1/a/305:306, 1/a/409:412 | No text annotation | geometric IL_8GLP_070 IL_73108.3 | |
| IL_9T4R_076 | 1/a/310:316, 1/a/403:405 | No text annotation | ||
| IL_9T4R_077 | 1/a/319:327, 1/a/399:400 | No text annotation | ||
| IL_9T4R_078 | 1/a/328:330, 1/a/396:398 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.3 | |
| IL_9T4R_079 | 1/a/336:338, 1/a/386:390 | No text annotation | geometric IL_8B0X_074 IL_76658.1 | |
| IL_9T4R_080 | 1/a/527:530, 1/a/541:554 | No text annotation | geometric IL_4WF9_015 IL_44923.2 | |
| IL_9T4R_081 | 1/a/581:584, 1/a/597:600 | Double sheared | geometric IL_4WF9_016 IL_58355.3 | |
| IL_9T4R_082 | 1/a/607:609, 1/a/618:620 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.4 | |
| IL_9T4R_083 | 1/a/638:640, 1/a/705:707 | Isolated non-canonical cWW pair | geometric IL_4WF9_018 IL_71625.4 | |
| IL_9T4R_084 | 1/a/649:653, 1/a/663:667 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9T4R_085 | 1/a/717:719, 1/a/851:853 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.5 | |
| IL_9T4R_086 | 1/a/719:723, 1/a/844:851 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_9T4R_087 | 1/a/742:743, 1/a/808:810 | Single bulged A | homologous IL_7A0S_016 IL_14190.3 | |
| IL_9T4R_088 | 1/a/747:748, 1/a/773:775 | Single bulged G | homologous IL_7A0S_017 IL_28408.3 | |
| IL_9T4R_089 | 1/a/748:752, 1/a/769:773 | No text annotation | geometric IL_8B0X_083 IL_15190.3 | |
| IL_9T4R_090 | 1/a/783:785, 1/a/802:803 | Major groove platform | geometric IL_4WF9_026 IL_48076.9 | |
| IL_9T4R_091 | 1/a/820:822, 1/a/832:836 | No text annotation | geometric IL_8B0X_085 IL_89509.2 | |
| IL_9T4R_092 | 1/a/882:883, 1/a/984:986 | Single stack bend | homologous IL_7A0S_022 IL_15011.4 | |
| IL_9T4R_093 | 1/a/889:892, 1/a/977:978 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_74641.3 | |
| IL_9T4R_094 | 1/a/889:893, 1/a/975:978 | No text annotation | geometric IL_4WF9_029 IL_01742.1 | |
| IL_9T4R_095 | 1/a/892:893, 1/a/975:977 | 90 degree turn | homologous IL_7A0S_024 IL_79144.1 | |
| IL_9T4R_096 | 1/a/897:898, 1/a/969:971 | Single bulged U | geometric IL_3WBM_001 IL_97561.6 | |
| IL_9T4R_097 | 1/a/901:907, 1/a/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.2 | |
| IL_9T4R_098 | 1/a/907:908, 1/a/958:960 | Minor groove platform | homologous IL_7A0S_028 IL_34520.4 | |
| IL_9T4R_099 | 1/a/909:913, 1/a/954:957 | C-loop | homologous IL_7A0S_029 IL_16301.2 | |
| IL_9T4R_101 | 1/a/920:924, 1/a/943:947 | No text annotation | geometric IL_8GLP_204 IL_87767.3 | |
| IL_9T4R_102 | 1/a/1038:1040, 1/a/1203:1204 | Single bulged C | homologous IL_7A0S_032 IL_05642.4 | |
| IL_9T4R_103 | 1/a/1042:1046, 1/a/1197:1201 | UAA/GAN | homologous IL_7A0S_033 IL_08938.2 | |
| IL_9T4R_104 | 1/a/1048:1055, 1/a/1194:1195 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_46868.1 | |
| IL_9T4R_105 | 1/a/1055:1057, 1/a/1193:1194 | Single bulged U | homologous IL_7A0S_035 IL_97561.6 | |
| IL_9T4R_106 | 1/a/1062:1068, 1/a/1184:1188 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_9T4R_107 | 1/a/1068:1074, 1/a/1168:1184 | No text annotation | homologous IL_7A0S_037 IL_50715.4 | |
| IL_9T4R_108 | 1/a/1075:1078, 1/a/1165:1167 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_76400.2 | |
| IL_9T4R_109 | 1/a/1081:1083, 1/a/1160:1162 | Isolated non-canonical cWW pair | geometric IL_7MLW_001 IL_01003.5 | |
| IL_9T4R_110 | 1/a/1087:1095, 1/a/1152:1156 | Kink-turn | geometric IL_8GLP_082 IL_99692.3 | |
| IL_9T4R_113 | 1/a/1235:1237, 1/a/1285:1288 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.6 | |
| IL_9T4R_114 | 1/a/1243:1245, 1/a/1277:1279 | Isolated non-canonical cWW pair | homologous IL_7A0S_042 IL_01003.5 | |
| IL_9T4R_115 | 1/a/1246:1253, 1/a/1272:1276 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_9T4R_116 | 1/a/1257:1259, 1/a/1266:1268 | Intercalated cWW | homologous IL_7A0S_044 IL_53541.1 | |
| IL_9T4R_117 | 1/a/1300:1307, 1/a/2036:2042 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.4 | |
| IL_9T4R_118 | 1/a/1347:1350, 1/a/1645:1646 | Major groove platform; stack outside cWW | geometric IL_9DFE_049 IL_74641.3 | |
| IL_9T4R_119 | 1/a/1356:1360, 1/a/1368:1370 | C-loop | homologous IL_7A0S_047 IL_06671.2 | |
| IL_9T4R_120 | 1/a/1388:1392, 1/a/1413:1417 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_9T4R_121 | 1/a/1394:1398, 1/a/1407:1411 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.2 | |
| IL_9T4R_122 | 1/a/1448:1451, 1/a/1630:1633 | Double sheared | geometric IL_4KZD_002 IL_58355.3 | |
| IL_9T4R_123 | 1/a/1452:1460, 1/a/1626:1629 | No text annotation | ||
| IL_9T4R_124 | 1/a/1461:1465, 1/a/1622:1625 | No text annotation | geometric IL_9E6Q_057 IL_74317.1 | |
| IL_9T4R_125 | 1/a/1476:1479, 1/a/1602:1606 | No text annotation | ||
| IL_9T4R_126 | 1/a/1480:1484, 1/a/1596:1601 | No text annotation | ||
| IL_9T4R_127 | 1/a/1512:1515, 1/a/1565:1569 | No text annotation | geometric IL_8B0X_118 IL_68574.5 | |
| IL_9T4R_128 | 1/a/1519:1522, 1/a/1558:1561 | Double sheared | geometric IL_4LFB_060 IL_58355.3 | |
| IL_9T4R_129 | 1/a/1525:1526, 1/a/1549:1555 | No text annotation | geometric IL_9DFE_060 IL_46086.1 | |
| IL_9T4R_130 | 1/a/1532:1534, 1/a/1542:1543 | No text annotation | geometric IL_8B0X_121 IL_14190.3 | |
| IL_9T4R_131 | 1/a/1693:1698, 1/a/2029:2031 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_9T4R_132 | 1/a/1705:1707, 1/a/2020:2022 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.2 | |
| IL_9T4R_133 | 1/a/1708:1711, 1/a/2018:2019 | No text annotation | geometric IL_8B0X_125 IL_74641.3 | |
| IL_9T4R_134 | 1/a/1708:1716, 1/a/2015:2019 | No text annotation | geometric IL_8B0X_180 IL_80252.2 | |
| IL_9T4R_135 | 1/a/1711:1716, 1/a/2015:2018 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.2 | |
| IL_9T4R_136 | 1/a/1728:1733, 1/a/1738:1744 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.2 | |
| IL_9T4R_137 | 1/a/1755:1757, 1/a/1768:1770 | Isolated cWS basepair | geometric IL_8CRE_412 IL_42997.6 | |
| IL_9T4R_138 | 1/a/1795:1796, 1/a/2005:2007 | Single bulged A | homologous IL_7A0S_064 IL_14190.3 | |
| IL_9T4R_139 | 1/a/1823:1829, 1/a/1838:1846 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9T4R_140 | 1/a/1862:1865, 1/a/1927:1928 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.2 | |
| IL_9T4R_141 | 1/a/1866:1867, 1/a/1923:1926 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.2 | |
| IL_9T4R_142 | 1/a/1871:1874, 1/a/1918:1919 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.3 | |
| IL_9T4R_143 | 1/a/1876:1880, 1/a/1912:1916 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.4 | |
| IL_9T4R_144 | 1/a/1881:1885, 1/a/1907:1911 | Triple sheared | homologous IL_7A0S_070 IL_15190.3 | |
| IL_9T4R_145 | 1/a/1889:1892, 1/a/1899:1903 | No text annotation | geometric IL_8B0X_136 IL_77691.7 | |
| IL_9T4R_146 | 1/a/1958:1959, 1/a/1989:1992 | No text annotation | geometric IL_8B0X_137 IL_24886.3 | |
| IL_9T4R_147 | 1/a/1959:1970, 1/a/1986:1989 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9T4R_148 | 1/a/2075:2077, 1/a/2642:2643 | Major groove platform | homologous IL_7A0S_073 IL_48076.9 | |
| IL_9T4R_149 | 1/a/2079:2081, 1/a/2637:2640 | No text annotation | geometric IL_8B0X_140 IL_80025.2 | |
| IL_9T4R_150 | 1/a/2092:2094, 1/a/2467:2468 | Single bulged U | homologous IL_7A0S_075 IL_97561.6 | |
| IL_9T4R_151 | 1/a/2095:2096, 1/a/2463:2466 | Minor groove platform | homologous IL_7A0S_076 IL_34520.4 | |
| IL_9T4R_152 | 1/a/2106:2108, 1/a/2261:2264 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.3 | |
| IL_9T4R_153 | 1/a/2121:2123, 1/a/2216:2218 | No text annotation | geometric IL_9E6Q_036 IL_01003.5 | |
| IL_9T4R_157 | 1/a/2227:2229, 1/a/2245:2246 | Single bulged G | geometric IL_6TFF_002 IL_28408.3 | |
| IL_9T4R_158 | 1/a/2322:2324, 1/a/2342:2346 | Isolated tHS basepair with bulges | homologous IL_7A0S_080 IL_14250.2 | |
| IL_9T4R_159 | 1/a/2375:2378, 1/a/2389:2392 | Double sheared | homologous IL_7A0S_081 IL_58355.3 | |
| IL_9T4R_160 | 1/a/2426:2428, 1/a/2439:2440 | No text annotation | geometric IL_8B0X_149 IL_97561.6 | |
| IL_9T4R_161 | 1/a/2478:2479, 1/a/2523:2525 | Single stack bend | homologous IL_7A0S_083 IL_15011.4 | |
| IL_9T4R_162 | 1/a/2479:2480, 1/a/2521:2523 | Major groove platform | homologous IL_7A0S_084 IL_48076.9 | |
| IL_9T4R_163 | 1/a/2482:2484, 1/a/2518:2519 | Major groove platform | homologous IL_7A0S_085 IL_48076.9 | |
| IL_9T4R_164 | 1/a/2484:2486, 1/a/2514:2518 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.3 | |
| IL_9T4R_165 | 1/a/2491:2495, 1/a/2505:2509 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.3 | |
| IL_9T4R_166 | 1/a/2532:2533, 1/a/2605:2607 | Major groove platform | homologous IL_7A0S_088 IL_46637.3 | |
| IL_9T4R_167 | 1/a/2535:2537, 1/a/2599:2603 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.5 | |
| IL_9T4R_168 | 1/a/2537:2538, 1/a/2596:2599 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.3 | |
| IL_9T4R_169 | 1/a/2547:2548, 1/a/2565:2568 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_9T4R_170 | 1/a/2616:2617, 1/a/2626:2628 | No text annotation | geometric IL_8GLP_154 IL_14190.3 | |
| IL_9T4R_171 | 1/a/2661:2665, 1/a/2799:2807 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9T4R_172 | 1/a/2677:2683, 1/a/2688:2693 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_9T4R_173 | 1/a/2705:2709, 1/a/2750:2752 | C-loop | homologous IL_7A0S_095 IL_63596.13 | |
| IL_9T4R_174 | 1/a/2712:2716, 1/a/2743:2747 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9T4R_175 | 1/a/2720:2721, 1/a/2736:2739 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.3 | |
| IL_9T4R_176 | 1/a/2762:2767, 1/a/2787:2792 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_9T4R_177 | 1/a/2856:2857, 1/a/2896:2898 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.3 | |
| IL_9T4R_178 | 1/a/2861:2863, 1/a/2889:2892 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_9T4R_179 | 1/a/2865:2870, 1/a/2883:2887 | No text annotation | homologous IL_7A0S_101 IL_48489.2 | |
| IL_9T4R_180 | 1/b/15:16, 1/b/63:65 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.3 | |
| IL_9T4R_181 | 1/b/21:27, 1/b/53:58 | No text annotation | ||
| IL_9T4R_182 | 1/b/28:29, 1/b/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.3 | |
| IL_9T4R_183 | 1/b/32:36, 1/b/42:46 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.13 | |
| IL_9T4R_184 | 1/b/69:77, 1/b/94:102 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 | |
| IL_9T4R_185 | 1/b/78:80, 1/b/91:93 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9T4R_041 | Single stack bend | ||
| IL_9T4R_100 | Isolated non-canonical cWW pair | ||
| IL_9T4R_111 | No text annotation | ||
| IL_9T4R_112 | No text annotation | ||
| IL_9T4R_154 | No text annotation | ||
| IL_9T4R_155 | No text annotation | ||
| IL_9T4R_156 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9T4R_001 | 1/A/47:48, 1/A/369:375, 1/A/401:403 | No text annotation | geometric J3_8B0X_001 J3_58657.2 | |
| J3_9T4R_002 | 1/A/47:53, 1/A/367:375, 1/A/401:403 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_9T4R_003 | 1/A/594:596, 1/A/659:662, 1/A/762:763 | No text annotation | geometric J3_8B0X_002 J3_01633.2 | |
| J3_9T4R_004 | 1/A/594:596, 1/A/659:663, 1/A/759:763 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_9T4R_005 | 1/A/680:681, 1/A/725:733, 1/A/740:742 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_9T4R_006 | 1/A/834:837, 1/A/866:870, 1/A/877:883 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_9T4R_007 | 1/A/945:948, 1/A/1354:1360, 1/A/1382:1389 | No text annotation | homologous J3_6CZR_061 NA | |
| J3_9T4R_008 | 1/A/952:955, 1/A/1245:1247, 1/A/1347:1350 | No text annotation | homologous J3_6CZR_019 NA | |
| J3_9T4R_009 | 1/A/964:971, 1/A/982:993, 1/A/1231:1235 | No text annotation | geometric J3_8B0X_007 J3_88451.2 | |
| J3_9T4R_010 | 1/A/999:1002, 1/A/1056:1058, 1/A/1220:1225 | No text annotation | geometric J3_8B0X_008 J3_84394.1 | |
| J3_9T4R_011 | 1/A/999:1009, 1/A/1050:1058, 1/A/1220:1225 | No text annotation | ||
| J3_9T4R_012 | 1/A/1010:1017, 1/A/1030:1035, 1/A/1046:1049 | No text annotation | ||
| J3_9T4R_013 | 1/A/1074:1079, 1/A/1118:1124, 1/A/1197:1203 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_9T4R_014 | 1/A/1084:1085, 1/A/1094:1097, 1/A/1110:1113 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_9T4R_015 | 1/A/1127:1129, 1/A/1165:1168, 1/A/1191:1194 | No text annotation | geometric J3_8B0X_012 J3_82365.6 | |
| J3_9T4R_016 | 1/A/1127:1129, 1/A/1165:1171, 1/A/1185:1194 | No text annotation | homologous J3_6CZR_025 NA | |
| J3_9T4R_017 | 1/A/1247:1251, 1/A/1306:1313, 1/A/1344:1347 | No text annotation | homologous J3_6CZR_026 NA | |
| J3_9T4R_018 | 1/a/30:31, 1/a/520:527, 1/a/554:555 | No text annotation | geometric J3_8GLP_025 J3_68715.2 | |
| J3_9T4R_019 | 1/a/30:31, 1/a/520:530, 1/a/541:555 | No text annotation | homologous J3_7A0S_015 J3_17917.2 | |
| J3_9T4R_020 | 1/a/32:35, 1/a/491:507, 1/a/514:519 | No text annotation | homologous J3_7A0S_016 J3_07616.2 | |
| J3_9T4R_021 | 1/a/56:67, 1/a/74:76, 1/a/109:113 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J3_9T4R_022 | 1/a/272:276, 1/a/295:302, 1/a/415:416 | No text annotation | homologous J3_7A0S_003 J3_97971.2 | |
| J3_9T4R_023 | 1/a/340:344, 1/a/359:368, 1/a/380:384 | No text annotation | geometric J3_9DFE_006 J3_77124.1 | |
| J3_9T4R_024 | 1/a/728:734, 1/a/818:820, 1/a/836:839 | No text annotation | homologous J3_7A0S_004 J3_46658.2 | |
| J3_9T4R_025 | 1/a/743:745, 1/a/777:781, 1/a/805:808 | No text annotation | homologous J3_7A0S_005 J3_69816.2 | |
| J3_9T4R_026 | 1/a/1335:1340, 1/a/1667:1669, 1/a/1681:1684 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9T4R_027 | 1/a/1342:1346, 1/a/1647:1653, 1/a/1662:1665 | No text annotation | geometric J3_4WF9_005 J3_68164.1 | |
| J3_9T4R_028 | 1/a/1381:1387, 1/a/1418:1422, 1/a/1439:1440 | No text annotation | homologous J3_7A0S_018 J3_94309.2 | |
| J3_9T4R_029 | 1/a/1468:1473, 1/a/1609:1610, 1/a/1613:1619 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_9T4R_030 | 1/a/2116:2118, 1/a/2221:2226, 1/a/2247:2253 | No text annotation | geometric J3_4WF9_007 J3_07703.1 | |
| J3_9T4R_031 | 1/a/2307:2309, 1/a/2409:2420, 1/a/2446:2452 | No text annotation | homologous J3_7A0S_020 J3_04772.2 | |
| J3_9T4R_032 | 1/a/2320:2322, 1/a/2346:2348, 1/a/2357:2362 | No text annotation | homologous J3_7A0S_010 J3_05327.2 | |
| J3_9T4R_033 | 1/a/2542:2545, 1/a/2570:2572, 1/a/2586:2592 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_9T4R_034 | 1/a/2814:2815, 1/a/2824:2829, 1/a/2907:2911 | No text annotation | geometric J3_9DFE_018 J3_24127.1 | |
| J3_9T4R_035 | 1/a/2832:2833, 1/a/2849:2854, 1/a/2900:2904 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_9T4R_036 | 1/b/9:14, 1/b/66:68, 1/b/103:106 | No text annotation | ||
| J4_9T4R_001 | 1/A/114:122, 1/A/246:248, 1/A/294:297, 1/A/319:320 | No text annotation | ||
| J4_9T4R_002 | 1/A/142:144, 1/A/178:185, 1/A/206:213, 1/A/227:229 | No text annotation | ||
| J4_9T4R_003 | 1/A/583:585, 1/A/772:777, 1/A/818:829, 1/A/888:889 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_9T4R_004 | 1/Z/7:10, 1/Z/25:27, 1/Z/43:49, 1/Z/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_95067.1 | |
| J4_9T4R_005 | 1/a/271:272, 1/a/416:421, 1/a/445:452, 1/a/467:470 | No text annotation | homologous J4_7A0S_001 J4_94698.2 | |
| J4_9T4R_006 | 1/a/340:344, 1/a/359:362, 1/a/366:368, 1/a/380:384 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9T4R_007 | 1/a/644:647, 1/a/669:673, 1/a/680:683, 1/a/695:701 | No text annotation | ||
| J4_9T4R_008 | 1/a/1308:1313, 1/a/1331:1332, 1/a/1687:1690, 1/a/2034:2035 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_9T4R_009 | 1/a/1347:1351, 1/a/1375:1380, 1/a/1441:1442, 1/a/1639:1646 | No text annotation | ||
| J4_9T4R_010 | 1/a/1350:1351, 1/a/1375:1380, 1/a/1441:1442, 1/a/1639:1645 | No text annotation | homologous J4_7A0S_006 J4_48150.2 | |
| J4_9T4R_011 | 1/a/1488:1490, 1/a/1510:1511, 1/a/1570:1574, 1/a/1588:1592 | No text annotation | ||
| J4_9T4R_012 | 1/a/1797:1801, 1/a/1813:1817, 1/a/1852:1855, 1/a/2000:2004 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_9T4R_013 | 1/a/1858:1860, 1/a/1930:1931, 1/a/1949:1958, 1/a/1992:1997 | No text annotation | ||
| J4_9T4R_014 | 1/a/2310:2314, 1/a/2368:2372, 1/a/2395:2397, 1/a/2406:2408 | No text annotation | homologous J4_7A0S_009 J4_98139.1 | |
| J4_9T4R_015 | 1/a/2668:2671, 1/a/2699:2701, 1/a/2756:2760, 1/a/2794:2796 | No text annotation | ||
| J5_9T4R_001 | 1/A/37:40, 1/A/411:414, 1/A/444:449, 1/A/501:508, 1/A/553:556 | No text annotation | ||
| J5_9T4R_002 | 1/A/59:62, 1/A/105:112, 1/A/322:324, 1/A/345:347, 1/A/358:362 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_9T4R_003 | 1/a/47:54, 1/a/115:120, 1/a/129:130, 1/a/149:151, 1/a/178:180 | No text annotation | ||
| J5_9T4R_004 | 1/a/271:276, 1/a/295:302, 1/a/415:421, 1/a/445:452, 1/a/467:470 | No text annotation | ||
| J5_9T4R_005 | 1/a/576:578, 1/a/603:607, 1/a/620:622, 1/a/1299:1300, 1/a/2042:2043 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9T4R_006 | 1/a/627:632, 1/a/713:716, 1/a/854:857, 1/a/1234:1235, 1/a/1288:1294 | No text annotation | ||
| J5_9T4R_007 | 1/a/1716:1724, 1/a/1748:1749, 1/a/1776:1777, 1/a/1781:1789, 1/a/2013:2015 | No text annotation | homologous J5_7A0S_005 J5_99177.2 | |
| J5_9T4R_008 | 1/a/2082:2089, 1/a/2471:2478, 1/a/2525:2531, 1/a/2608:2613, 1/a/2631:2636 | No text annotation | ||
| J5_9T4R_009 | 1/a/2099:2102, 1/a/2268:2271, 1/a/2283:2284, 1/a/2306:2307, 1/a/2452:2460 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_9T4R_001 | 1/a/45:46, 1/a/181:186, 1/a/217:227, 1/a/234:238, 1/a/265:269, 1/a/472:479 | No text annotation | ||
| J6_9T4R_002 | 1/a/2099:2102, 1/a/2268:2271, 1/a/2283:2284, 1/a/2306:2309, 1/a/2409:2420, 1/a/2446:2460 | No text annotation | ||
| J7_9T4R_001 | 1/a/8:15, 1/a/570:576, 1/a/2043:2048, 1/a/2065:2068, 1/a/2650:2655, 1/a/2813:2814, 1/a/2911:2912 | No text annotation | ||
| J7_9T4R_002 | 1/a/862:867, 1/a/880:881, 1/a/987:990, 1/a/1015:1020, 1/a/1031:1035, 1/a/1207:1208, 1/a/1224:1229 | No text annotation |
Problematic loops
No problematic loops
Coloring options: