HL_9T4R_008

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1253

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9T4R|1|A|A|328
9T4R|1|A|A|329
9T4R|1|A|C|330
9T4R|1|A|U|331
9T4R|1|A|G|332
9T4R|1|A|A|333
9T4R|1|A|G|334
9T4R|1|A|A|335
9T4R|1|A|C|336
9T4R|1|A|A|337
9T4R|1|A|C|338
9T4R|1|A|G|339
9T4R|1|A|G|340
9T4R|1|A|U|341

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20