HL_9T4R_021

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

9T4R|1|A|G|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_021 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.1822

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9T4R|1|A|G|972
9T4R|1|A|A|973
9T4R|1|A|A|974
9T4R|1|A|G|975
9T4R|1|A|C|976
9T4R|1|A|A|977
9T4R|1|A|A|978
9T4R|1|A|C|979
9T4R|1|A|G|980
9T4R|1|A|C|981

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain Z

Transfer RNA; tRNA

Chain j

Small ribosomal subunit protein uS10