HL_9T4R_052

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

9T4R|1|a|U|590, 9T4R|1|a|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_052 not in the Motif Atlas

Geometric match to HL_4WF9_017

Geometric discrepancy: 0.085

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

9T4R|1|a|C|587
9T4R|1|a|G|588
9T4R|1|a|U|589
9T4R|1|a|U|590
9T4R|1|a|A|591
9T4R|1|a|A|592
9T4R|1|a|U|593
9T4R|1|a|G|594

Current chains

Chain a

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21