HL_9T4R_056

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

9T4R|1|a|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_056 not in the Motif Atlas

Geometric match to HL_9DFE_019

Geometric discrepancy: 0.1279

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9T4R|1|a|U|686
9T4R|1|a|G|687
9T4R|1|a|A|688
9T4R|1|a|A|689
9T4R|1|a|U|690
9T4R|1|a|A|691
9T4R|1|a|G|692

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33B

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15