HL_9T4R_061

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

9T4R|1|a|U|1002, 9T4R|1|a|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_061 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2611

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9T4R|1|a|U|999
9T4R|1|a|G|1000
9T4R|1|a|A|1001
9T4R|1|a|U|1002
9T4R|1|a|A|1003
9T4R|1|a|A|1004
9T4R|1|a|G|1005
9T4R|1|a|G|1006

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

Large ribosomal subunit protein uL16