HL_9T4R_069

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9T4R|1|a|U|1433, 9T4R|1|a|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_069 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3457

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9T4R|1|a|G|1426
9T4R|1|a|U|1427
9T4R|1|a|U|1428
9T4R|1|a|G|1429
9T4R|1|a|A|1430
9T4R|1|a|U|1431
9T4R|1|a|A|1432
9T4R|1|a|U|1433
9T4R|1|a|U|1434
9T4R|1|a|C|1435

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23