HL_9T4R_075

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

9T4R|1|a|A|1676

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_075 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.0751

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9T4R|1|a|A|1671
9T4R|1|a|U|1672
9T4R|1|a|G|1673
9T4R|1|a|A|1674
9T4R|1|a|G|1675
9T4R|1|a|A|1676
9T4R|1|a|A|1677
9T4R|1|a|U|1678
9T4R|1|a|U|1679

Current chains

Chain a

23S rRNA

Nearby chains