HL_9T4R_079
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUAUCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9T4R|1|a|A|1805, 9T4R|1|a|U|1806, 9T4R|1|a|C|1807, 9T4R|1|a|A|1811
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9T4R_079 not in the Motif Atlas
- Geometric match to HL_8B0X_073
- Geometric discrepancy: 0.0365
- The information below is about HL_8B0X_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9T4R|1|a|U|1802
9T4R|1|a|U|1803
9T4R|1|a|U|1804
9T4R|1|a|A|1805
9T4R|1|a|U|1806
9T4R|1|a|C|1807
9T4R|1|a|A|1808
9T4R|1|a|A|1809
9T4R|1|a|A|1810
9T4R|1|a|A|1811
9T4R|1|a|A|1812
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: