HL_9T4R_086

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

9T4R|1|a|U|2236, 9T4R|1|a|U|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_086 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.0784

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9T4R|1|a|C|2234
9T4R|1|a|U|2235
9T4R|1|a|U|2236
9T4R|1|a|A|2237
9T4R|1|a|U|2238
9T4R|1|a|C|2239
9T4R|1|a|G|2240

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2