HL_9T4R_098

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_098 not in the Motif Atlas

Homologous match to HL_7A0S_063

Geometric discrepancy: 0.0872

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9T4R|1|a|C|2683
9T4R|1|a|G|2684
9T4R|1|a|A|2685
9T4R|1|a|G|2686
9T4R|1|a|A|2687
9T4R|1|a|G|2688

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6