HL_9T4R_106

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUACG

Length

6 nucleotides

Bulged bases

9T4R|1|b|C|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_106 not in the Motif Atlas

Geometric match to HL_9DFE_006

Geometric discrepancy: 0.318

The information below is about HL_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

9T4R|1|b|C|83
9T4R|1|b|U|84
9T4R|1|b|U|85
9T4R|1|b|A|86
9T4R|1|b|C|87
9T4R|1|b|G|88

Current chains

Chain b

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain l

Large ribosomal subunit protein uL16

Chain y

Large ribosomal subunit protein uL30