HL_9T5X_072

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9T5X|1|a|A|1614, 9T5X|1|a|A|1616, 9T5X|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T5X_072 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1206

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9T5X|1|a|C|1612
9T5X|1|a|G|1613
9T5X|1|a|A|1614
9T5X|1|a|C|1615
9T5X|1|a|A|1616
9T5X|1|a|C|1617
9T5X|1|a|6MZ|1618
9T5X|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain V

NADH-quinone oxidoreductase subunit K

Chain r

Large ribosomal subunit protein uL22