HL_9T5X_081

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9T5X|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T5X_081 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1173

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9T5X|1|a|G|1949
9T5X|1|a|G|1950
9T5X|1|a|U|1951
9T5X|1|a|A|1952
9T5X|1|a|A|1953
9T5X|1|a|G|1954
9T5X|1|a|U|1955
9T5X|1|a|U|1956
9T5X|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

Large ribosomal subunit protein uL14