HL_9T61_012

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GGUAAUAUC

Length

9 nucleotides

Bulged bases

9T61|1|A|U|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T61_012 not in the Motif Atlas

Geometric match to HL_9DE7_001

Geometric discrepancy: 0.2889

The information below is about HL_9DE7_001

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9T61|1|A|G|459
9T61|1|A|G|460
9T61|1|A|U|461
9T61|1|A|A|462
9T61|1|A|A|463
9T61|1|A|U|464
9T61|1|A|A|465
9T61|1|A|U|466
9T61|1|A|C|467

Current chains

Chain A

16S ribosomal RNA

Nearby chains