HL_9T7H_013

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

9T7H|1|1|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T7H_013 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.1106

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9T7H|1|1|C|460
9T7H|1|1|U|461
9T7H|1|1|G|462
9T7H|1|1|G|463
9T7H|1|1|A|464
9T7H|1|1|A|465
9T7H|1|1|C|466
9T7H|1|1|G|467

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BU

Large ribosomal subunit protein uL24

Chain Bb

Large ribosomal subunit protein eL32