HL_9TEX_032

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEX_032 not in the Motif Atlas

Homologous match to HL_5J8B_109

Geometric discrepancy: 0.0754

The information below is about HL_5J8B_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81376.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

44

Unit IDs

9TEX|1|Z|G|31
9TEX|1|Z|C|32
9TEX|1|Z|U|33
9TEX|1|Z|C|34
9TEX|1|Z|A|35
9TEX|1|Z|U|36
9TEX|1|Z|A|37
9TEX|1|Z|A|38
9TEX|1|Z|C|39

Current chains

Chain Z

fMet-Initiator P-tRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain I

Small ribosomal subunit protein uS9

Chain X

mRNA