HL_9TEX_039

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9TEX|1|a|A|196, 9TEX|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEX_039 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0902

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9TEX|1|a|G|194
9TEX|1|a|A|195
9TEX|1|a|A|196
9TEX|1|a|A|197
9TEX|1|a|C|198
9TEX|1|a|A|199
9TEX|1|a|U|200
9TEX|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

Large ribosomal subunit protein bL28