HL_9TEX_044

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9TEX|1|a|G|329, 9TEX|1|a|A|330, 9TEX|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEX_044 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.375

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9TEX|1|a|G|327
9TEX|1|a|U|328
9TEX|1|a|G|329
9TEX|1|a|A|330
9TEX|1|a|C|331
9TEX|1|a|A|332
9TEX|1|a|G|333
9TEX|1|a|C|334
9TEX|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24