HL_9TEY_039

3D structure

PDB id

9TEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the terminating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9TEY|1|V|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEY_039 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1209

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9TEY|1|V|C|305
9TEY|1|V|U|306
9TEY|1|V|G|307
9TEY|1|V|G|308
9TEY|1|V|A|309
9TEY|1|V|A|310
9TEY|1|V|A|311
9TEY|1|V|G|312

Current chains

Chain V

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24