HL_9TEY_041

3D structure

PDB id

9TEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the terminating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9TEY|1|V|G|329, 9TEY|1|V|A|330, 9TEY|1|V|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEY_041 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.2368

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9TEY|1|V|G|327
9TEY|1|V|U|328
9TEY|1|V|G|329
9TEY|1|V|A|330
9TEY|1|V|C|331
9TEY|1|V|A|332
9TEY|1|V|G|333
9TEY|1|V|C|334
9TEY|1|V|C|335

Current chains

Chain V

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24