HL_9TEZ_005

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEZ_005 not in the Motif Atlas

Homologous match to HL_8B0X_037

Geometric discrepancy: 0.0541

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TEZ|1|V|U|158
9TEZ|1|V|G|159
9TEZ|1|V|A|160
9TEZ|1|V|A|161
9TEZ|1|V|U|162
9TEZ|1|V|C|163
9TEZ|1|V|C|164
9TEZ|1|V|A|165
9TEZ|1|V|U|166
9TEZ|1|V|A|167
9TEZ|1|V|G|168

Current chains

Chain V

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28