HL_9TEZ_013

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9TEZ|1|V|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEZ_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.108

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TEZ|1|V|G|410
9TEZ|1|V|G|411
9TEZ|1|V|A|412
9TEZ|1|V|C|413
9TEZ|1|V|C|414
9TEZ|1|V|A|415
9TEZ|1|V|U|416
9TEZ|1|V|C|417

Current chains

Chain V

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15