HL_9TEZ_058

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEZ_058 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1805

The information below is about HL_7A0S_061

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9TEZ|1|V|C|2551
9TEZ|1|V|OMU|2552
9TEZ|1|V|G|2553
9TEZ|1|V|U|2554
9TEZ|1|V|U|2555
9TEZ|1|V|C|2556
9TEZ|1|V|G|2557

Current chains

Chain V

23S rRNA

Nearby chains

Chain W

Peptide chain release factor RF1