HL_9TI5_030

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

9TI5|1|A|C|1362, 9TI5|1|A|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI5_030 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.0835

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9TI5|1|A|G|1361
9TI5|1|A|C|1362
9TI5|1|A|U|1363
9TI5|1|A|C|1364
9TI5|1|A|G|1365
9TI5|1|A|U|1366
9TI5|1|A|C|1367

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22