HL_9TI6_004

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_004 not in the Motif Atlas

Geometric match to HL_5AOX_001

Geometric discrepancy: 0.1782

The information below is about HL_5AOX_001

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9TI6|1|A|A|136
9TI6|1|A|G|137
9TI6|1|A|U|138
9TI6|1|A|U|139
9TI6|1|A|A|140
9TI6|1|A|U|141
9TI6|1|A|G|142
9TI6|1|A|U|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23