HL_9TI6_028
3D structure
- PDB id
- 9TI6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CGUAAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TI6_028 not in the Motif Atlas
- Homologous match to HL_6PRV_002
- Geometric discrepancy: 0.2165
- The information below is about HL_6PRV_002
- Detailed Annotation
- GNRA with tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9TI6|1|A|C|1136
9TI6|1|A|G|1137
9TI6|1|A|U|1138
9TI6|1|A|A|1139
9TI6|1|A|A|1140
9TI6|1|A|U|1141
9TI6|1|A|A|1142
9TI6|1|A|G|1143
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain C
- Ribosome-recycling factor
- Chain K
- Large ribosomal subunit protein uL6
- Chain L
- Large ribosomal subunit protein uL11
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