HL_9TI6_056

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

9TI6|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_056 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1883

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9TI6|1|A|C|2431
9TI6|1|A|G|2432
9TI6|1|A|C|2433
9TI6|1|A|A|2434
9TI6|1|A|U|2435
9TI6|1|A|G|2436
9TI6|1|A|G|2437
9TI6|1|A|A|2438
9TI6|1|A|A|2439
9TI6|1|A|G|2440

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15