HL_9TI6_063

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9TI6|1|A|G|2778, 9TI6|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_063 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2333

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9TI6|1|A|C|2772
9TI6|1|A|U|2773
9TI6|1|A|G|2774
9TI6|1|A|A|2775
9TI6|1|A|A|2776
9TI6|1|A|A|2777
9TI6|1|A|G|2778
9TI6|1|A|C|2779
9TI6|1|A|A|2780
9TI6|1|A|U|2781
9TI6|1|A|C|2782
9TI6|1|A|U|2783
9TI6|1|A|A|2784
9TI6|1|A|A|2785
9TI6|1|A|G|2786

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

Large ribosomal subunit protein uL6

Chain M

50S ribosomal protein L13