HL_9TI7_003

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9TI7|1|A|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_003 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.1409

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9TI7|1|A|G|122
9TI7|1|A|G|123
9TI7|1|A|A|124
9TI7|1|A|A|125
9TI7|1|A|A|126
9TI7|1|A|C|127

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23