HL_9TI7_006

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9TI7|1|A|A|199, 9TI7|1|A|A|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_006 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0953

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9TI7|1|A|G|197
9TI7|1|A|A|198
9TI7|1|A|A|199
9TI7|1|A|A|200
9TI7|1|A|C|201
9TI7|1|A|A|202
9TI7|1|A|U|203
9TI7|1|A|C|204

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

Transfer RNA; tRNA

Chain O

50S ribosomal protein L15