HL_9TI7_009

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9TI7|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1142

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9TI7|1|A|C|348
9TI7|1|A|U|349
9TI7|1|A|G|350
9TI7|1|A|G|351
9TI7|1|A|A|352
9TI7|1|A|A|353
9TI7|1|A|A|354
9TI7|1|A|G|355

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L24