HL_9TI7_013

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9TI7|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1317

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TI7|1|A|G|456
9TI7|1|A|G|457
9TI7|1|A|A|458
9TI7|1|A|C|459
9TI7|1|A|C|460
9TI7|1|A|A|461
9TI7|1|A|U|462
9TI7|1|A|C|463

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15