HL_9TI7_056

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

9TI7|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_056 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.187

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9TI7|1|A|C|2431
9TI7|1|A|G|2432
9TI7|1|A|C|2433
9TI7|1|A|A|2434
9TI7|1|A|U|2435
9TI7|1|A|G|2436
9TI7|1|A|G|2437
9TI7|1|A|A|2438
9TI7|1|A|A|2439
9TI7|1|A|G|2440

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15