HL_9TI7_073

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

G(5MU)(PSU)CGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_073 not in the Motif Atlas

Homologous match to HL_9MTS_103

Geometric discrepancy: 0.1369

The information below is about HL_9MTS_103

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9TI7|1|D|G|53
9TI7|1|D|5MU|54
9TI7|1|D|PSU|55
9TI7|1|D|C|56
9TI7|1|D|G|57
9TI7|1|D|A|58
9TI7|1|D|A|59
9TI7|1|D|U|60
9TI7|1|D|C|61

Current chains

Chain D

tRNA(Ser3)

Nearby chains