HL_9TI8_004

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI8_004 not in the Motif Atlas

Geometric match to HL_5AOX_001

Geometric discrepancy: 0.1774

The information below is about HL_5AOX_001

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9TI8|1|A|A|136
9TI8|1|A|G|137
9TI8|1|A|U|138
9TI8|1|A|U|139
9TI8|1|A|A|140
9TI8|1|A|U|141
9TI8|1|A|G|142
9TI8|1|A|U|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23