HL_9TI9_050

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9TI9|1|A|G|2277

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI9_050 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1497

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9TI9|1|A|C|2275
9TI9|1|A|U|2276
9TI9|1|A|G|2277
9TI9|1|A|OMG|2278
9TI9|1|A|G|2279
9TI9|1|A|G|2280
9TI9|1|A|C|2281
9TI9|1|A|G|2282
9TI9|1|A|G|2283

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Ribosome-recycling factor

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27