HL_9TKR_001

3D structure

PDB id

9TKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S elongation competent complex (70S EC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TKR_001 not in the Motif Atlas

Homologous match to HL_8B0X_001

Geometric discrepancy: 0.0705

The information below is about HL_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.4

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9TKR|1|D1|U|12
9TKR|1|D1|U|13
9TKR|1|D1|U|14
9TKR|1|D1|G|15
9TKR|1|D1|A|16
9TKR|1|D1|U|17
9TKR|1|D1|C|18
9TKR|1|D1|A|19
9TKR|1|D1|U|20
9TKR|1|D1|G|21
9TKR|1|D1|G|22

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS5

Chain AK

Small ribosomal subunit protein uS12