9TKR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9TKR_001 | 1/D1/12:22 | No text annotation | homologous HL_8B0X_001 HL_73535.4 | |
| HL_9TKR_003 | 1/D1/158:163 | No text annotation | homologous HL_8B0X_002 HL_34789.7 | |
| HL_9TKR_004 | 1/D1/186:191 | No text annotation | homologous HL_8B0X_003 HL_34789.7 | |
| HL_9TKR_006 | 1/D1/259:267 | No text annotation | homologous HL_8B0X_005 HL_87268.5 | |
| HL_9TKR_007 | 1/D1/296:301 | No text annotation | homologous HL_8B0X_006 HL_34789.7 | |
| HL_9TKR_008 | 1/D1/320:333 | No text annotation | homologous HL_8B0X_007 HL_39665.1 | |
| HL_9TKR_009 | 1/D1/342:347 | No text annotation | homologous HL_8B0X_008 HL_61337.7 | |
| HL_9TKR_010 | 1/D1/379:384 | No text annotation | homologous HL_8B0X_009 HL_34789.7 | |
| HL_9TKR_011 | 1/D1/419:424 | No text annotation | homologous HL_8B0X_010 HL_61337.7 | |
| HL_9TKR_012 | 1/D1/462:470 | No text annotation | homologous HL_8B0X_011 HL_98423.6 | |
| HL_9TKR_013 | 1/D1/522:527 | No text annotation | homologous HL_8B0X_099 HL_34789.7 | |
| HL_9TKR_014 | 1/D1/617:623 | No text annotation | homologous HL_8B0X_013 HL_27656.2 | |
| HL_9TKR_015 | 1/D1/689:698 | No text annotation | homologous HL_8B0X_014 HL_38491.5 | |
| HL_9TKR_016 | 1/D1/726:731 | No text annotation | homologous HL_8B0X_015 HL_34789.7 | |
| HL_9TKR_017 | 1/D1/786:796 | No text annotation | homologous HL_8B0X_016 HL_38491.5 | |
| HL_9TKR_019 | 1/D1/862:867 | No text annotation | homologous HL_8B0X_017 HL_34789.7 | |
| HL_9TKR_020 | 1/D1/897:902 | No text annotation | homologous HL_8B0X_018 HL_34789.7 | |
| HL_9TKR_021 | 1/D1/963:972 | No text annotation | homologous HL_8B0X_019 HL_97521.4 | |
| HL_9TKR_022 | 1/D1/1012:1017 | No text annotation | homologous HL_8B0X_020 HL_34789.7 | |
| HL_9TKR_024 | 1/D1/1076:1081 | No text annotation | homologous HL_8B0X_021 HL_34789.7 | |
| HL_9TKR_025 | 1/D1/1089:1096 | No text annotation | homologous HL_8B0X_022 HL_63894.5 | |
| HL_9TKR_026 | 1/D1/1134:1140 | No text annotation | homologous HL_8B0X_023 HL_79773.1 | |
| HL_9TKR_027 | 1/D1/1165:1171 | No text annotation | homologous HL_8B0X_024 HL_34789.7 | |
| HL_9TKR_028 | 1/D1/1265:1270 | No text annotation | homologous HL_8B0X_025 HL_34789.7 | |
| HL_9TKR_029 | 1/D1/1314:1323 | No text annotation | homologous HL_8B0X_026 HL_93658.1 | |
| HL_9TKR_030 | 1/D1/1356:1366 | No text annotation | homologous HL_8B0X_027 HL_86432.4 | |
| HL_9TKR_031 | 1/D1/1449:1454 | No text annotation | homologous HL_8B0X_028 HL_61337.7 | |
| HL_9TKR_032 | 1/D1/1515:1520 | No text annotation | homologous HL_8B0X_029 HL_34789.7 | |
| HL_9TKR_033 | 1/D2/59:68 | No text annotation | homologous HL_8B0X_033 HL_35677.5 | |
| HL_9TKR_034 | 1/D2/87:95 | No text annotation | homologous HL_8B0X_034 HL_65821.1 | |
| HL_9TKR_035 | 1/D2/123:128 | No text annotation | homologous HL_8B0X_035 HL_82710.4 | |
| HL_9TKR_036 | 1/D2/137:142 | No text annotation | ||
| HL_9TKR_037 | 1/D2/158:168 | No text annotation | homologous HL_8B0X_037 NA | |
| HL_9TKR_038 | 1/D2/194:201 | No text annotation | homologous HL_8B0X_038 HL_02262.2 | |
| HL_9TKR_039 | 1/D2/225:230 | No text annotation | homologous HL_8B0X_039 HL_63151.1 | |
| HL_9TKR_040 | 1/D2/246:252 | No text annotation | homologous HL_8B0X_040 HL_76371.5 | |
| HL_9TKR_041 | 1/D2/305:312 | No text annotation | homologous HL_8B0X_041 HL_13999.6 | |
| HL_9TKR_042 | 1/D2/327:335 | No text annotation | homologous HL_8B0X_043 HL_27670.7 | |
| HL_9TKR_043 | 1/D2/382:392 | No text annotation | homologous HL_8B0X_044 HL_91503.8 | |
| HL_9TKR_044 | 1/D2/410:417 | No text annotation | homologous HL_8B0X_045 HL_30680.5 | |
| HL_9TKR_045 | 1/D2/462:467 | No text annotation | homologous HL_8B0X_046 HL_34789.7 | |
| HL_9TKR_046 | 1/D2/487:493 | No text annotation | homologous HL_8B0X_047 HL_34789.7 | |
| HL_9TKR_048 | 1/D2/566:575 | T-loop with 2 stacked bulged bases | homologous HL_8B0X_048 HL_33597.8 | |
| HL_9TKR_049 | 1/D2/611:617 | No text annotation | geometric HL_9E6Q_019 HL_25795.2 | |
| HL_9TKR_050 | 1/D2/629:634 | No text annotation | homologous HL_8B0X_050 HL_34789.7 | |
| HL_9TKR_051 | 1/D2/641:647 | No text annotation | homologous HL_8B0X_051 HL_07380.1 | |
| HL_9TKR_052 | 1/D2/712:719 | No text annotation | homologous HL_8B0X_052 HL_98423.6 | |
| HL_9TKR_053 | 1/D2/744:753 | No text annotation | homologous HL_7A0S_022 HL_50204.4 | |
| HL_9TKR_054 | 1/D2/779:785 | No text annotation | homologous HL_8B0X_054 HL_79773.1 | |
| HL_9TKR_055 | 1/D2/826:831 | No text annotation | homologous HL_8B0X_055 HL_27530.4 | |
| HL_9TKR_056 | 1/D2/884:892 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.5 | |
| HL_9TKR_057 | 1/D2/955:962 | GNRA | homologous HL_7A0S_026 HL_34789.7 | |
| HL_9TKR_058 | 1/D2/978:985 | No text annotation | homologous HL_8B0X_058 HL_47171.4 | |
| HL_9TKR_062 | 1/D2/1222:1227 | No text annotation | homologous HL_8B0X_059 HL_34789.7 | |
| HL_9TKR_063 | 1/D2/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_8B0X_060 HL_33597.8 | |
| HL_9TKR_064 | 1/D2/1324:1330 | No text annotation | homologous HL_8B0X_061 HL_49081.3 | |
| HL_9TKR_065 | 1/D2/1363:1368 | No text annotation | homologous HL_8B0X_062 HL_34789.7 | |
| HL_9TKR_066 | 1/D2/1389:1398 | No text annotation | homologous HL_8B0X_063 HL_77449.4 | |
| HL_9TKR_067 | 1/D2/1451:1459 | No text annotation | homologous HL_8B0X_064 HL_00557.1 | |
| HL_9TKR_068 | 1/D2/1492:1498 | No text annotation | homologous HL_8B0X_065 HL_49081.3 | |
| HL_9TKR_070 | 1/D2/1565:1568 | No text annotation | homologous HL_8B0X_067 HL_90436.7 | |
| HL_9TKR_071 | 1/D2/1612:1619 | No text annotation | homologous HL_8B0X_068 HL_28592.5 | |
| HL_9TKR_072 | 1/D2/1630:1636 | No text annotation | homologous HL_8B0X_069 HL_34789.7 | |
| HL_9TKR_073 | 1/D2/1691:1696 | UNCG | homologous HL_7A0S_042 HL_61337.7 | |
| HL_9TKR_074 | 1/D2/1728:1731 | No text annotation | geometric HL_9DFE_050 HL_72836.1 | |
| HL_9TKR_075 | 1/D2/1752:1756 | No text annotation | homologous HL_8B0X_072 HL_80709.5 | |
| HL_9TKR_076 | 1/D2/1777:1787 | No text annotation | homologous HL_8B0X_073 HL_87681.4 | |
| HL_9TKR_077 | 1/D2/1806:1811 | No text annotation | homologous HL_8B0X_074 HL_37569.4 | |
| HL_9TKR_078 | 1/D2/1868:1873 | No text annotation | geometric HL_6N5P_002 HL_64374.2 | |
| HL_9TKR_079 | 1/D2/1910:1920 | No text annotation | homologous HL_8B0X_076 HL_82185.4 | |
| HL_9TKR_080 | 1/D2/1949:1957 | No text annotation | homologous HL_8B0X_077 HL_33350.1 | |
| HL_9TKR_081 | 1/D2/2027:2036 | No text annotation | homologous HL_8B0X_078 HL_78372.4 | |
| HL_9TKR_083 | 1/D2/2209:2215 | No text annotation | homologous HL_8B0X_079 HL_33632.1 | |
| HL_9TKR_084 | 1/D2/2248:2256 | LSU P loop | homologous HL_8B0X_080 HL_11974.5 | |
| HL_9TKR_085 | 1/D2/2264:2276 | No text annotation | homologous HL_8B0X_081 HL_02042.4 | |
| HL_9TKR_086 | 1/D2/2304:2312 | No text annotation | homologous HL_8B0X_101 HL_02452.4 | |
| HL_9TKR_087 | 1/D2/2324:2331 | No text annotation | homologous HL_8B0X_083 HL_52651.5 | |
| HL_9TKR_088 | 1/D2/2356:2361 | No text annotation | homologous HL_8B0X_084 HL_34789.7 | |
| HL_9TKR_089 | 1/D2/2374:2379 | No text annotation | homologous HL_8B0X_085 HL_34789.7 | |
| HL_9TKR_090 | 1/D2/2404:2413 | No text annotation | homologous HL_8B0X_086 HL_51853.2 | |
| HL_9TKR_091 | 1/D2/2471:2479 | No text annotation | homologous HL_8B0X_087 HL_52011.4 | |
| HL_9TKR_092 | 1/D2/2528:2535 | No text annotation | homologous HL_8B0X_088 HL_02262.2 | |
| HL_9TKR_093 | 1/D2/2551:2557 | LSU A loop | homologous HL_8B0X_089 HL_02262.2 | |
| HL_9TKR_094 | 1/D2/2594:2599 | No text annotation | homologous HL_8B0X_090 HL_34789.7 | |
| HL_9TKR_095 | 1/D2/2658:2663 | No text annotation | homologous HL_8B0X_091 HL_34789.7 | |
| HL_9TKR_096 | 1/D2/2701:2706 | No text annotation | homologous HL_8B0X_092 HL_12125.5 | |
| HL_9TKR_097 | 1/D2/2745:2759 | No text annotation | homologous HL_8B0X_093 HL_53269.5 | |
| HL_9TKR_098 | 1/D2/2795:2801 | UNCG variation | geometric HL_6VMY_004 HL_34080.1 | |
| HL_9TKR_099 | 1/D2/2819:2827 | No text annotation | homologous HL_7A0S_067 HL_37889.4 | |
| HL_9TKR_100 | 1/D2/2856:2861 | No text annotation | homologous HL_8B0X_096 HL_34789.7 | |
| HL_9TKR_101 | 1/D3/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.5 | |
| HL_9TKR_102 | 1/D3/86:90 | No text annotation | homologous HL_8B0X_098 HL_90436.7 | |
| HL_9TKR_103 | 1/D5/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_9TKR_104 | 1/D5/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.5 | |
| HL_9TKR_105 | 1/D5/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_33597.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9TKR_002 | Mini UNCG | ||
| HL_9TKR_005 | No text annotation | ||
| HL_9TKR_018 | No text annotation | ||
| HL_9TKR_023 | No text annotation | ||
| HL_9TKR_047 | Mini UNCG with extended bulge | ||
| HL_9TKR_059 | No text annotation | ||
| HL_9TKR_060 | GNRA with tandem sheared | ||
| HL_9TKR_061 | No text annotation | ||
| HL_9TKR_069 | No text annotation | ||
| HL_9TKR_082 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9TKR_001 | 1/D1/30:32, 1/D1/552:553 | Single bulged G | homologous IL_8B0X_001 IL_28408.5 | |
| IL_9TKR_002 | 1/D1/44:45, 1/D1/396:398 | Single bulged A | homologous IL_8B0X_002 IL_14190.5 | |
| IL_9TKR_003 | 1/D1/47:52, 1/D1/359:361 | No text annotation | geometric IL_8B0X_003 IL_32983.4 | |
| IL_9TKR_004 | 1/D1/54:56, 1/D1/356:357 | Minor groove platform | homologous IL_8B0X_004 IL_26092.1 | |
| IL_9TKR_005 | 1/D1/63:66, 1/D1/103:104 | No text annotation | homologous IL_8B0X_005 IL_71421.6 | |
| IL_9TKR_006 | 1/D1/67:69, 1/D1/99:102 | No text annotation | homologous IL_8B0X_006 IL_54325.1 | |
| IL_9TKR_007 | 1/D1/70:73, 1/D1/97:98 | No text annotation | homologous IL_8B0X_007 IL_87975.2 | |
| IL_9TKR_008 | 1/D1/75:76, 1/D1/93:95 | GG cWH outside loop | homologous IL_8B0X_008 IL_28408.5 | |
| IL_9TKR_010 | 1/D1/128:131, 1/D1/231:233 | No text annotation | homologous IL_8B0X_009 IL_19025.1 | |
| IL_9TKR_011 | 1/D1/132:136, 1/D1/227:230 | Minor groove platform related | homologous IL_8B0X_010 IL_60988.5 | |
| IL_9TKR_012 | 1/D1/144:146, 1/D1/176:178 | Isolated cWH basepair | homologous IL_8B0X_011 IL_10892.5 | |
| IL_9TKR_013 | 1/D1/147:153, 1/D1/168:175 | No text annotation | homologous IL_8B0X_012 IL_24485.3 | |
| IL_9TKR_014 | 1/D1/203:206, 1/D1/213:214 | No text annotation | geometric IL_9E6Q_071 IL_87975.2 | |
| IL_9TKR_015 | 1/D1/242:247, 1/D1/277:284 | Kink-turn with non-sequential stacking | homologous IL_8B0X_013 IL_46174.7 | |
| IL_9TKR_016 | 1/D1/249:252, 1/D1/274:275 | No text annotation | homologous IL_8B0X_014 IL_22002.1 | |
| IL_9TKR_017 | 1/D1/292:293, 1/D1/304:308 | No text annotation | homologous IL_8B0X_015 IL_06671.4 | |
| IL_9TKR_018 | 1/D1/367:369, 1/D1/392:393 | Single bulged U | homologous IL_8B0X_016 IL_97561.9 | |
| IL_9TKR_019 | 1/D1/371:375, 1/D1/389:390 | No text annotation | homologous IL_8B0X_017 IL_26900.4 | |
| IL_9TKR_020 | 1/D1/375:376, 1/D1/387:389 | Single bulged G | homologous IL_8B0X_018 IL_28408.5 | |
| IL_9TKR_021 | 1/D1/409:416, 1/D1/427:433 | No text annotation | homologous IL_8B0X_019 IL_62329.1 | |
| IL_9TKR_022 | 1/D1/440:442, 1/D1/492:497 | No text annotation | geometric IL_8B0X_020 IL_02111.1 | |
| IL_9TKR_023 | 1/D1/446:450, 1/D1/483:488 | tWW-tWH-tHS | homologous IL_8B0X_021 IL_82100.1 | |
| IL_9TKR_024 | 1/D1/450:455, 1/D1/477:483 | No text annotation | homologous IL_8B0X_022 NA | |
| IL_9TKR_025 | 1/D1/504:511, 1/D1/540:541 | No text annotation | homologous IL_8B0X_023 IL_11411.4 | |
| IL_9TKR_026 | 1/D1/515:521, 1/D1/528:536 | Kink-turn related | homologous IL_8B0X_024 IL_52042.4 | |
| IL_9TKR_027 | 1/D1/569:575, 1/D1/880:881 | No text annotation | homologous IL_8B0X_025 IL_20847.4 | |
| IL_9TKR_028 | 1/D1/580:584, 1/D1/757:761 | No text annotation | homologous IL_8B0X_026 IL_05821.4 | |
| IL_9TKR_029 | 1/D1/594:596, 1/D1/644:645 | Major groove platform | homologous IL_8B0X_027 IL_48076.11 | |
| IL_9TKR_030 | 1/D1/597:598, 1/D1/640:643 | No text annotation | homologous IL_8B0X_028 IL_73108.5 | |
| IL_9TKR_031 | 1/D1/605:612, 1/D1/628:633 | No text annotation | homologous IL_8B0X_029 IL_04211.1 | |
| IL_9TKR_032 | 1/D1/654:655, 1/D1/751:754 | Major groove platform; stack outside cWW | geometric IL_8B0X_030 IL_74641.5 | |
| IL_9TKR_033 | 1/D1/659:660, 1/D1/745:747 | Single stack bend | homologous IL_8B0X_031 IL_15011.6 | |
| IL_9TKR_034 | 1/D1/662:666, 1/D1/740:743 | Tandem non-canonical cWW pairs | homologous IL_8B0X_032 IL_15225.5 | |
| IL_9TKR_035 | 1/D1/673:678, 1/D1/712:717 | No text annotation | homologous IL_8B0X_033 NA | |
| IL_9TKR_036 | 1/D1/684:688, 1/D1/699:706 | Kink-turn | homologous IL_8B0X_034 IL_71972.2 | |
| IL_9TKR_037 | 1/D1/774:778, 1/D1/804:805 | No text annotation | homologous IL_8B0X_035 IL_29346.3 | |
| IL_9TKR_038 | 1/D1/779:783, 1/D1/799:803 | No text annotation | homologous IL_8B0X_036 IL_05821.4 | |
| IL_9TKR_039 | 1/D1/887:894, 1/D1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8B0X_037 IL_84044.4 | |
| IL_9TKR_040 | 1/D1/922:923, 1/D1/1393:1395 | Single bulged A | homologous IL_8B0X_038 IL_14190.5 | |
| IL_9TKR_041 | 1/D1/925:927, 1/D1/1390:1391 | Single bulged G | homologous IL_8B0X_039 IL_28408.5 | |
| IL_9TKR_042 | 1/D1/933:935, 1/D1/1380:1384 | No text annotation | homologous IL_8B0X_040 IL_03866.1 | |
| IL_9TKR_043 | 1/D1/953:954, 1/D1/1226:1228 | Minor groove platform | homologous IL_8B0X_041 IL_37129.1 | |
| IL_9TKR_044 | 1/D1/993:997, 1/D1/1044:1045 | No text annotation | geometric IL_8B0X_042 IL_49794.1 | |
| IL_9TKR_045 | 1/D1/998:999, 1/D1/1041:1043 | Single stack bend | homologous IL_8B0X_043 IL_15011.6 | |
| IL_9TKR_046 | 1/D1/1048:1050, 1/D1/1208:1209 | Single bulged U | homologous IL_8B0X_044 IL_97561.9 | |
| IL_9TKR_047 | 1/D1/1052:1056, 1/D1/1204:1206 | No text annotation | homologous IL_8B0X_046 IL_82453.4 | |
| IL_9TKR_048 | 1/D1/1057:1058, 1/D1/1199:1203 | Minor groove platform | homologous IL_8B0X_047 IL_26092.1 | |
| IL_9TKR_049 | 1/D1/1060:1061, 1/D1/1195:1197 | Single bulged A | homologous IL_8B0X_048 IL_14190.5 | |
| IL_9TKR_050 | 1/D1/1061:1063, 1/D1/1193:1195 | Isolated non-canonical cWW pair | homologous IL_8B0X_049 IL_81485.1 | |
| IL_9TKR_051 | 1/D1/1124:1128, 1/D1/1144:1149 | No text annotation | homologous IL_8B0X_050 IL_38603.1 | |
| IL_9TKR_052 | 1/D1/1129:1132, 1/D1/1142:1143 | No text annotation | homologous IL_8B0X_051 IL_87975.2 | |
| IL_9TKR_053 | 1/D1/1158:1161, 1/D1/1175:1181 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9TKR_054 | 1/D1/1247:1253, 1/D1/1284:1290 | No text annotation | homologous IL_8B0X_053 IL_12056.1 | |
| IL_9TKR_055 | 1/D1/1255:1258, 1/D1/1277:1282 | No text annotation | homologous IL_8B0X_054 IL_08849.1 | |
| IL_9TKR_056 | 1/D1/1259:1263, 1/D1/1272:1276 | No text annotation | homologous IL_8B0X_055 IL_87767.5 | |
| IL_9TKR_057 | 1/D1/1303:1308, 1/D1/1329:1334 | No text annotation | homologous IL_8B0X_056 IL_28265.2 | |
| IL_9TKR_058 | 1/D1/1399:1401, 1/D1/1501:1504 | No text annotation | homologous IL_8B0X_057 IL_18228.4 | |
| IL_9TKR_059 | 1/D1/1401:1404, 1/D1/1497:1501 | No text annotation | homologous IL_8B0X_058 IL_25873.5 | |
| IL_9TKR_060 | 1/D1/1405:1407, 1/D1/1494:1496 | Isolated non-canonical cWW pair | homologous IL_8B0X_177 IL_01003.7 | |
| IL_9TKR_061 | 1/D1/1407:1409, 1/D1/1491:1494 | No text annotation | ||
| IL_9TKR_062 | 1/D1/1412:1414, 1/D1/1486:1488 | Isolated non-canonical cWW pair | homologous IL_8B0X_060 IL_01003.7 | |
| IL_9TKR_063 | 1/D1/1416:1419, 1/D1/1481:1484 | Double sheared | homologous IL_8B0X_061 IL_58355.5 | |
| IL_9TKR_064 | 1/D1/1430:1435, 1/D1/1466:1470 | No text annotation | homologous IL_8B0X_062 IL_47352.3 | |
| IL_9TKR_065 | 1/D1/1440:1442, 1/D1/1460:1461 | Minor groove platform | homologous IL_8B0X_063 IL_37129.1 | |
| IL_9TKR_066 | 1/D1/1445:1448, 1/D1/1455:1457 | No text annotation | homologous IL_8B0X_064 IL_05502.3 | |
| IL_9TKR_067 | 1/D2/24:30, 1/D2/510:516 | No text annotation | homologous IL_8B0X_065 IL_22311.4 | |
| IL_9TKR_068 | 1/D2/36:37, 1/D2/442:444 | Single bulged A | homologous IL_8B0X_066 IL_14190.5 | |
| IL_9TKR_069 | 1/D2/43:44, 1/D2/434:436 | Minor groove platform | homologous IL_8B0X_067 IL_37129.1 | |
| IL_9TKR_070 | 1/D2/81:85, 1/D2/97:105 | Kink-turn | homologous IL_8B0X_068 IL_28245.1 | |
| IL_9TKR_071 | 1/D2/183:184, 1/D2/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.6 | |
| IL_9TKR_072 | 1/D2/188:194, 1/D2/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8B0X_070 IL_62167.6 | |
| IL_9TKR_073 | 1/D2/239:245, 1/D2/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8B0X_071 IL_02666.4 | |
| IL_9TKR_074 | 1/D2/269:271, 1/D2/366:370 | No text annotation | homologous IL_8B0X_072 NA | |
| IL_9TKR_075 | 1/D2/274:281, 1/D2/359:363 | No text annotation | homologous IL_8B0X_073 IL_22028.1 | |
| IL_9TKR_076 | 1/D2/293:295, 1/D2/343:347 | No text annotation | homologous IL_8B0X_074 IL_76658.1 | |
| IL_9TKR_077 | 1/D2/481:484, 1/D2/496:509 | No text annotation | geometric IL_8B0X_075 IL_44923.4 | |
| IL_9TKR_078 | 1/D2/536:539, 1/D2/554:557 | Double sheared | homologous IL_8B0X_076 IL_58355.5 | |
| IL_9TKR_079 | 1/D2/564:566, 1/D2/575:577 | No text annotation | homologous IL_8B0X_077 IL_71625.6 | |
| IL_9TKR_080 | 1/D2/606:610, 1/D2/618:622 | No text annotation | homologous IL_8B0X_078 IL_66798.3 | |
| IL_9TKR_081 | 1/D2/672:674, 1/D2/806:808 | Isolated non-canonical cWW pair | homologous IL_8B0X_079 IL_01003.7 | |
| IL_9TKR_082 | 1/D2/674:678, 1/D2/799:806 | No text annotation | homologous IL_8B0X_080 IL_73855.4 | |
| IL_9TKR_083 | 1/D2/697:698, 1/D2/763:765 | Single bulged A | homologous IL_8B0X_081 IL_14190.5 | |
| IL_9TKR_084 | 1/D2/702:703, 1/D2/728:730 | Single bulged G | homologous IL_8B0X_082 IL_28408.5 | |
| IL_9TKR_085 | 1/D2/703:707, 1/D2/724:728 | No text annotation | homologous IL_8B0X_083 IL_15190.5 | |
| IL_9TKR_086 | 1/D2/738:740, 1/D2/757:758 | Major groove platform | homologous IL_8B0X_084 IL_48076.11 | |
| IL_9TKR_087 | 1/D2/775:777, 1/D2/787:791 | No text annotation | homologous IL_8B0X_085 IL_89509.4 | |
| IL_9TKR_088 | 1/D2/844:847, 1/D2/933:934 | No text annotation | geometric IL_8B0X_087 IL_79144.1 | |
| IL_9TKR_089 | 1/D2/844:848, 1/D2/930:934 | No text annotation | geometric IL_8B0X_179 IL_01742.1 | |
| IL_9TKR_090 | 1/D2/847:848, 1/D2/930:933 | No text annotation | homologous IL_8B0X_088 IL_36175.2 | |
| IL_9TKR_091 | 1/D2/850:851, 1/D2/926:928 | Single stack bend | homologous IL_8B0X_089 IL_15011.6 | |
| IL_9TKR_092 | 1/D2/856:862, 1/D2/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8B0X_090 IL_94128.4 | |
| IL_9TKR_093 | 1/D2/862:863, 1/D2/913:915 | Single bulged G | homologous IL_8B0X_091 IL_28408.5 | |
| IL_9TKR_094 | 1/D2/864:868, 1/D2/909:912 | No text annotation | homologous IL_8B0X_092 IL_16301.4 | |
| IL_9TKR_095 | 1/D2/870:872, 1/D2/905:907 | Isolated non-canonical cWW pair | homologous IL_8B0X_093 IL_71625.6 | |
| IL_9TKR_096 | 1/D2/875:879, 1/D2/898:902 | No text annotation | homologous IL_8B0X_094 IL_87767.5 | |
| IL_9TKR_098 | 1/D2/994:996, 1/D2/1159:1160 | Single bulged C | homologous IL_8B0X_096 IL_05642.6 | |
| IL_9TKR_099 | 1/D2/998:1002, 1/D2/1153:1157 | UAA/GAN | homologous IL_8B0X_097 IL_08938.4 | |
| IL_9TKR_100 | 1/D2/1004:1011, 1/D2/1150:1151 | No text annotation | homologous IL_8B0X_098 IL_46868.2 | |
| IL_9TKR_101 | 1/D2/1011:1013, 1/D2/1149:1150 | Single bulged U | homologous IL_8B0X_099 IL_97561.9 | |
| IL_9TKR_102 | 1/D2/1018:1024, 1/D2/1140:1144 | Kink-turn related | homologous IL_8B0X_100 IL_57188.6 | |
| IL_9TKR_103 | 1/D2/1024:1030, 1/D2/1124:1140 | No text annotation | homologous IL_8B0X_101 IL_50715.4 | |
| IL_9TKR_104 | 1/D2/1031:1034, 1/D2/1121:1123 | No text annotation | homologous IL_8B0X_102 IL_19025.1 | |
| IL_9TKR_105 | 1/D2/1038:1041, 1/D2/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_8B0X_103 IL_15225.5 | |
| IL_9TKR_106 | 1/D2/1043:1051, 1/D2/1108:1112 | Kink-turn | homologous IL_8B0X_104 IL_99692.4 | |
| IL_9TKR_109 | 1/D2/1196:1198, 1/D2/1247:1250 | No text annotation | homologous IL_8B0X_105 IL_84227.2 | |
| IL_9TKR_110 | 1/D2/1202:1206, 1/D2/1240:1243 | No text annotation | homologous IL_8B0X_106 NA | |
| IL_9TKR_111 | 1/D2/1208:1215, 1/D2/1234:1238 | Kink-turn | homologous IL_8B0X_107 IL_90775.4 | |
| IL_9TKR_112 | 1/D2/1262:1269, 1/D2/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8B0X_108 IL_62167.6 | |
| IL_9TKR_113 | 1/D2/1310:1313, 1/D2/1603:1604 | Major groove platform; stack outside cWW | geometric IL_4WF9_049 IL_74641.5 | |
| IL_9TKR_114 | 1/D2/1319:1323, 1/D2/1331:1333 | No text annotation | homologous IL_8B0X_110 IL_63596.15 | |
| IL_9TKR_115 | 1/D2/1351:1355, 1/D2/1376:1380 | No text annotation | homologous IL_8B0X_111 IL_89021.4 | |
| IL_9TKR_116 | 1/D2/1357:1361, 1/D2/1370:1374 | No text annotation | homologous IL_8B0X_112 IL_05821.4 | |
| IL_9TKR_117 | 1/D2/1415:1416, 1/D2/1582:1587 | No text annotation | homologous IL_8B0X_113 NA | |
| IL_9TKR_118 | 1/D2/1417:1421, 1/D2/1577:1581 | UAA/GAN | homologous IL_8B0X_114 IL_08938.4 | |
| IL_9TKR_119 | 1/D2/1432:1435, 1/D2/1557:1561 | No text annotation | homologous IL_8B0X_115 IL_60418.1 | |
| IL_9TKR_120 | 1/D2/1437:1440, 1/D2/1551:1555 | No text annotation | homologous IL_8B0X_116 IL_74317.1 | |
| IL_9TKR_121 | 1/D2/1450:1451, 1/D2/1459:1461 | Single bulged U | homologous IL_8B0X_117 IL_97561.9 | |
| IL_9TKR_122 | 1/D2/1468:1471, 1/D2/1520:1524 | No text annotation | homologous IL_8B0X_118 IL_68574.5 | |
| IL_9TKR_123 | 1/D2/1474:1478, 1/D2/1513:1517 | tSH-tWH-tHS | homologous IL_8B0X_119 IL_38862.5 | |
| IL_9TKR_124 | 1/D2/1481:1482, 1/D2/1507:1510 | No text annotation | homologous IL_8B0X_120 IL_52564.1 | |
| IL_9TKR_125 | 1/D2/1489:1491, 1/D2/1499:1500 | Single bulged A | homologous IL_8B0X_121 IL_14190.5 | |
| IL_9TKR_126 | 1/D2/1526:1529, 1/D2/1542:1546 | UAA/GAN variation | homologous IL_8B0X_122 IL_45790.4 | |
| IL_9TKR_127 | 1/D2/1651:1656, 1/D2/2004:2006 | No text annotation | homologous IL_8B0X_123 IL_12566.7 | |
| IL_9TKR_128 | 1/D2/1663:1665, 1/D2/1995:1997 | No text annotation | homologous IL_8B0X_124 IL_10432.4 | |
| IL_9TKR_129 | 1/D2/1666:1669, 1/D2/1993:1994 | Major groove platform; stack outside cWW | geometric IL_9E6Q_063 IL_74641.5 | |
| IL_9TKR_130 | 1/D2/1666:1674, 1/D2/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_80252.4 | |
| IL_9TKR_131 | 1/D2/1669:1674, 1/D2/1990:1993 | No text annotation | homologous IL_8B0X_126 IL_28217.4 | |
| IL_9TKR_132 | 1/D2/1686:1691, 1/D2/1696:1702 | No text annotation | homologous IL_8B0X_127 IL_20700.4 | |
| IL_9TKR_133 | 1/D2/1712:1718, 1/D2/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_8B0X_128 IL_82100.1 | |
| IL_9TKR_134 | 1/D2/1720:1724, 1/D2/1736:1740 | No text annotation | homologous IL_8B0X_129 IL_70744.1 | |
| IL_9TKR_135 | 1/D2/1727:1728, 1/D2/1731:1733 | Single bulged C | homologous IL_8B0X_130 IL_05642.6 | |
| IL_9TKR_136 | 1/D2/1770:1771, 1/D2/1980:1982 | Single bulged A | homologous IL_8B0X_131 IL_14190.5 | |
| IL_9TKR_137 | 1/D2/1798:1804, 1/D2/1813:1821 | Kink-turn related | homologous IL_8B0X_132 IL_17069.6 | |
| IL_9TKR_138 | 1/D2/1837:1840, 1/D2/1902:1903 | No text annotation | homologous IL_8B0X_133 IL_55206.4 | |
| IL_9TKR_139 | 1/D2/1841:1842, 1/D2/1898:1901 | No text annotation | homologous IL_8B0X_134 IL_71421.6 | |
| IL_9TKR_140 | 1/D2/1846:1849, 1/D2/1893:1894 | No text annotation | homologous IL_8B0X_135 IL_73108.5 | |
| IL_9TKR_141 | 1/D2/1851:1860, 1/D2/1882:1891 | No text annotation | homologous IL_8B0X_181 NA | |
| IL_9TKR_142 | 1/D2/1864:1867, 1/D2/1874:1878 | No text annotation | homologous IL_8B0X_136 IL_77691.8 | |
| IL_9TKR_143 | 1/D2/1933:1934, 1/D2/1964:1967 | No text annotation | geometric IL_8B0X_137 IL_24886.5 | |
| IL_9TKR_144 | 1/D2/1934:1945, 1/D2/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9TKR_145 | 1/D2/2050:2052, 1/D2/2617:2618 | Major groove platform | homologous IL_8B0X_139 IL_48076.11 | |
| IL_9TKR_146 | 1/D2/2054:2056, 1/D2/2612:2615 | No text annotation | homologous IL_8B0X_140 IL_80025.4 | |
| IL_9TKR_147 | 1/D2/2067:2069, 1/D2/2442:2443 | Single bulged U | homologous IL_8B0X_182 IL_97561.9 | |
| IL_9TKR_148 | 1/D2/2070:2071, 1/D2/2438:2441 | Minor groove platform | homologous IL_8B0X_143 IL_37129.1 | |
| IL_9TKR_149 | 1/D2/2081:2083, 1/D2/2236:2239 | No text annotation | homologous IL_8B0X_144 IL_87316.5 | |
| IL_9TKR_150 | 1/D2/2085:2087, 1/D2/2232:2234 | Isolated non-canonical cWW pair | homologous IL_8B0X_145 IL_71625.6 | |
| IL_9TKR_156 | 1/D2/2202:2204, 1/D2/2220:2221 | Single bulged U | homologous IL_8B0X_146 IL_97561.9 | |
| IL_9TKR_157 | 1/D2/2350:2353, 1/D2/2364:2367 | Double sheared | homologous IL_8B0X_148 IL_58355.5 | |
| IL_9TKR_158 | 1/D2/2401:2403, 1/D2/2414:2415 | Single bulged U | geometric IL_9H3G_006 IL_97561.9 | |
| IL_9TKR_159 | 1/D2/2453:2454, 1/D2/2498:2500 | Single stack bend | homologous IL_8B0X_183 IL_15011.6 | |
| IL_9TKR_160 | 1/D2/2454:2455, 1/D2/2496:2498 | Major groove platform | homologous IL_8B0X_184 IL_48076.11 | |
| IL_9TKR_161 | 1/D2/2457:2459, 1/D2/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.11 | |
| IL_9TKR_162 | 1/D2/2459:2461, 1/D2/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.5 | |
| IL_9TKR_163 | 1/D2/2466:2470, 1/D2/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.5 | |
| IL_9TKR_164 | 1/D2/2507:2508, 1/D2/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.5 | |
| IL_9TKR_165 | 1/D2/2510:2512, 1/D2/2574:2578 | No text annotation | homologous IL_8B0X_155 IL_30722.2 | |
| IL_9TKR_166 | 1/D2/2512:2513, 1/D2/2571:2574 | No text annotation | homologous IL_8B0X_156 IL_44609.5 | |
| IL_9TKR_167 | 1/D2/2522:2523, 1/D2/2540:2543 | No text annotation | homologous IL_8B0X_157 IL_94991.4 | |
| IL_9TKR_168 | 1/D2/2591:2592, 1/D2/2601:2603 | Single bulged A | homologous IL_8B0X_159 IL_14190.5 | |
| IL_9TKR_169 | 1/D2/2636:2640, 1/D2/2774:2782 | No text annotation | homologous IL_8B0X_160 IL_04638.4 | |
| IL_9TKR_170 | 1/D2/2652:2658, 1/D2/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8B0X_161 IL_16458.6 | |
| IL_9TKR_171 | 1/D2/2680:2684, 1/D2/2725:2727 | No text annotation | homologous IL_8B0X_162 IL_63596.15 | |
| IL_9TKR_172 | 1/D2/2687:2691, 1/D2/2718:2722 | No text annotation | homologous IL_8B0X_163 IL_82016.1 | |
| IL_9TKR_173 | 1/D2/2695:2696, 1/D2/2711:2714 | No text annotation | homologous IL_8B0X_164 IL_44609.5 | |
| IL_9TKR_174 | 1/D2/2737:2742, 1/D2/2762:2767 | No text annotation | homologous IL_8B0X_165 IL_91079.1 | |
| IL_9TKR_175 | 1/D2/2806:2811, 1/D2/2889:2892 | No text annotation | homologous IL_8B0X_167 NA | |
| IL_9TKR_176 | 1/D2/2838:2839, 1/D2/2878:2880 | No text annotation | homologous IL_8B0X_168 IL_77710.2 | |
| IL_9TKR_177 | 1/D2/2843:2846, 1/D2/2870:2874 | No text annotation | homologous IL_8B0X_169 IL_60988.5 | |
| IL_9TKR_178 | 1/D2/2847:2852, 1/D2/2865:2869 | No text annotation | homologous IL_8B0X_170 IL_48489.4 | |
| IL_9TKR_179 | 1/D3/17:18, 1/D3/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.5 | |
| IL_9TKR_180 | 1/D3/23:28, 1/D3/56:60 | No text annotation | homologous IL_8B0X_172 IL_18472.5 | |
| IL_9TKR_181 | 1/D3/30:31, 1/D3/51:54 | No text annotation | homologous IL_8QYX_167 IL_73108.5 | |
| IL_9TKR_182 | 1/D3/34:38, 1/D3/44:48 | Symmetric double minor groove platform | homologous IL_8B0X_174 IL_58103.15 | |
| IL_9TKR_183 | 1/D3/71:79, 1/D3/97:105 | Bacterial 5S Loop E | homologous IL_8B0X_175 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9TKR_009 | Partly complementary | ||
| IL_9TKR_097 | Single bulged A | ||
| IL_9TKR_107 | No text annotation | ||
| IL_9TKR_108 | No text annotation | ||
| IL_9TKR_151 | Tandem non-canonical cWW pairs | ||
| IL_9TKR_152 | Isolated cWS basepair | ||
| IL_9TKR_153 | Isolated non-canonical cWW pair | ||
| IL_9TKR_154 | No text annotation | ||
| IL_9TKR_155 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9TKR_001 | 1/D1/46:47, 1/D1/361:367, 1/D1/393:395 | No text annotation | geometric J3_8B0X_001 J3_58657.4 | |
| J3_9TKR_002 | 1/D1/46:52, 1/D1/359:367, 1/D1/393:395 | No text annotation | homologous J3_8B0X_027 J3_63856.4 | |
| J3_9TKR_003 | 1/D1/586:588, 1/D1/651:654, 1/D1/754:755 | No text annotation | geometric J3_8B0X_002 J3_01633.3 | |
| J3_9TKR_004 | 1/D1/586:588, 1/D1/651:655, 1/D1/751:755 | No text annotation | homologous J3_8B0X_028 J3_17385.8 | |
| J3_9TKR_005 | 1/D1/672:673, 1/D1/717:725, 1/D1/732:734 | No text annotation | homologous J3_8B0X_003 J3_74074.1 | |
| J3_9TKR_006 | 1/D1/826:829, 1/D1/857:861, 1/D1/868:874 | No text annotation | homologous J3_8B0X_004 J3_02285.1 | |
| J3_9TKR_007 | 1/D1/936:939, 1/D1/1344:1350, 1/D1/1372:1379 | No text annotation | homologous J3_8B0X_005 J3_85722.4 | |
| J3_9TKR_008 | 1/D1/943:946, 1/D1/1235:1237, 1/D1/1337:1340 | No text annotation | homologous J3_8B0X_006 J3_44359.4 | |
| J3_9TKR_009 | 1/D1/955:962, 1/D1/973:984, 1/D1/1221:1225 | No text annotation | homologous J3_8B0X_007 J3_88451.4 | |
| J3_9TKR_010 | 1/D1/990:993, 1/D1/1045:1047, 1/D1/1210:1215 | No text annotation | geometric J3_4LFB_005 J3_84394.1 | |
| J3_9TKR_011 | 1/D1/990:997, 1/D1/1044:1047, 1/D1/1210:1215 | No text annotation | homologous J3_8B0X_029 J3_28881.1 | |
| J3_9TKR_013 | 1/D1/1063:1068, 1/D1/1107:1113, 1/D1/1187:1193 | No text annotation | homologous J3_8B0X_010 J3_01343.1 | |
| J3_9TKR_014 | 1/D1/1073:1074, 1/D1/1083:1087, 1/D1/1098:1102 | No text annotation | homologous J3_8B0X_011 NA | |
| J3_9TKR_015 | 1/D1/1116:1118, 1/D1/1155:1158, 1/D1/1181:1184 | No text annotation | geometric J3_8B0X_012 J3_82365.8 | |
| J3_9TKR_016 | 1/D1/1116:1118, 1/D1/1155:1161, 1/D1/1175:1184 | No text annotation | homologous J3_8B0X_031 J3_40706.2 | |
| J3_9TKR_017 | 1/D1/1237:1241, 1/D1/1296:1303, 1/D1/1334:1337 | No text annotation | homologous J3_8B0X_013 J3_03192.4 | |
| J3_9TKR_018 | 1/D2/30:31, 1/D2/474:481, 1/D2/509:510 | No text annotation | geometric J3_8B0X_014 J3_68715.4 | |
| J3_9TKR_019 | 1/D2/30:31, 1/D2/474:484, 1/D2/496:510 | No text annotation | homologous J3_8B0X_032 J3_17917.4 | |
| J3_9TKR_020 | 1/D2/32:35, 1/D2/445:461, 1/D2/468:473 | No text annotation | homologous J3_8B0X_033 J3_07616.4 | |
| J3_9TKR_021 | 1/D2/56:57, 1/D2/70:76, 1/D2/110:114 | No text annotation | homologous J3_8B0X_015 J3_01004.4 | |
| J3_9TKR_022 | 1/D2/297:301, 1/D2/316:325, 1/D2/337:341 | No text annotation | homologous J3_8B0X_034 J3_77124.1 | |
| J3_9TKR_023 | 1/D2/683:689, 1/D2/773:775, 1/D2/791:794 | No text annotation | homologous J3_8B0X_016 J3_46658.4 | |
| J3_9TKR_024 | 1/D2/698:700, 1/D2/732:736, 1/D2/760:763 | No text annotation | homologous J3_8B0X_017 J3_69816.4 | |
| J3_9TKR_026 | 1/D2/1298:1303, 1/D2/1625:1627, 1/D2/1639:1642 | No text annotation | homologous J3_8B0X_018 J3_32852.7 | |
| J3_9TKR_027 | 1/D2/1306:1309, 1/D2/1605:1611, 1/D2/1620:1622 | No text annotation | homologous J3_8B0X_019 J3_47341.1 | |
| J3_9TKR_028 | 1/D2/1344:1349, 1/D2/1382:1385, 1/D2/1402:1403 | No text annotation | homologous J3_8B0X_020 NA | |
| J3_9TKR_029 | 1/D2/1424:1429, 1/D2/1564:1565, 1/D2/1568:1574 | No text annotation | homologous J3_8B0X_035 J3_34864.3 | |
| J3_9TKR_030 | 1/D2/2091:2093, 1/D2/2196:2200, 1/D2/2223:2228 | No text annotation | homologous J3_8B0X_021 J3_17460.1 | |
| J3_9TKR_031 | 1/D2/2282:2284, 1/D2/2384:2395, 1/D2/2421:2427 | No text annotation | homologous J3_8B0X_036 J3_04772.4 | |
| J3_9TKR_032 | 1/D2/2295:2299, 1/D2/2317:2323, 1/D2/2332:2337 | No text annotation | ||
| J3_9TKR_033 | 1/D2/2517:2520, 1/D2/2545:2547, 1/D2/2561:2567 | No text annotation | homologous J3_8B0X_023 J3_32601.6 | |
| J3_9TKR_034 | 1/D2/2789:2791, 1/D2/2805:2806, 1/D2/2892:2894 | No text annotation | homologous J3_8B0X_024 NA | |
| J3_9TKR_035 | 1/D2/2812:2815, 1/D2/2831:2836, 1/D2/2882:2888 | No text annotation | homologous J3_8B0X_025 NA | |
| J3_9TKR_036 | 1/D3/10:16, 1/D3/68:70, 1/D3/106:110 | No text annotation | homologous J3_8B0X_026 NA | |
| J4_9TKR_001 | 1/D1/115:122, 1/D1/239:240, 1/D1/286:289, 1/D1/311:312 | No text annotation | homologous J4_8B0X_001 J4_90044.1 | |
| J4_9TKR_002 | 1/D1/142:144, 1/D1/178:184, 1/D1/193:198, 1/D1/219:221 | No text annotation | homologous J4_8B0X_002 NA | |
| J4_9TKR_003 | 1/D1/575:577, 1/D1/764:769, 1/D1/810:821, 1/D1/879:880 | No text annotation | homologous J4_8B0X_003 J4_14595.4 | |
| J4_9TKR_004 | 1/D2/268:269, 1/D2/370:375, 1/D2/399:406, 1/D2/421:424 | No text annotation | homologous J4_8B0X_004 J4_94698.4 | |
| J4_9TKR_005 | 1/D2/601:604, 1/D2/624:628, 1/D2/635:638, 1/D2/650:656 | No text annotation | homologous J4_8B0X_006 NA | |
| J4_9TKR_006 | 1/D2/1270:1276, 1/D2/1294:1295, 1/D2/1645:1648, 1/D2/2009:2010 | No text annotation | homologous J4_8B0X_007 J4_19484.2 | |
| J4_9TKR_007 | 1/D2/1310:1314, 1/D2/1338:1343, 1/D2/1404:1405, 1/D2/1597:1604 | No text annotation | ||
| J4_9TKR_008 | 1/D2/1313:1314, 1/D2/1338:1343, 1/D2/1404:1405, 1/D2/1597:1603 | No text annotation | homologous J4_8B0X_009 J4_48150.2 | |
| J4_9TKR_009 | 1/D2/1444:1445, 1/D2/1466:1467, 1/D2/1525:1526, 1/D2/1546:1547 | No text annotation | homologous J4_8B0X_010 J4_75575.3 | |
| J4_9TKR_010 | 1/D2/1772:1776, 1/D2/1788:1792, 1/D2/1827:1830, 1/D2/1975:1979 | No text annotation | homologous J4_8B0X_011 J4_61477.6 | |
| J4_9TKR_011 | 1/D2/1833:1835, 1/D2/1905:1906, 1/D2/1924:1933, 1/D2/1967:1972 | No text annotation | homologous J4_8B0X_012 J4_42306.3 | |
| J4_9TKR_012 | 1/D2/2285:2289, 1/D2/2343:2347, 1/D2/2370:2372, 1/D2/2381:2383 | No text annotation | homologous J4_8B0X_013 J4_98139.1 | |
| J4_9TKR_013 | 1/D2/2643:2646, 1/D2/2674:2676, 1/D2/2731:2735, 1/D2/2769:2771 | No text annotation | homologous J4_8B0X_014 J4_77044.5 | |
| J4_9TKR_014 | 1/D5/7:10, 1/D5/25:27, 1/D5/43:49, 1/D5/65:66 | tRNA junction | homologous J4_4WT8_034 J4_95067.3 | |
| J5_9TKR_001 | 1/D1/36:39, 1/D1/403:406, 1/D1/436:440, 1/D1/497:500, 1/D1/545:548 | No text annotation | ||
| J5_9TKR_002 | 1/D1/36:39, 1/D1/403:406, 1/D1/436:442, 1/D1/492:500, 1/D1/545:548 | No text annotation | homologous J5_8B0X_002 NA | |
| J5_9TKR_003 | 1/D1/58:61, 1/D1/106:113, 1/D1/314:316, 1/D1/337:339, 1/D1/350:354 | No text annotation | homologous J5_8B0X_003 J5_58574.4 | |
| J5_9TKR_004 | 1/D2/47:54, 1/D2/116:121, 1/D2/130:131, 1/D2/148:150, 1/D2/176:178 | No text annotation | homologous J5_8B0X_004 J5_27223.4 | |
| J5_9TKR_005 | 1/D2/531:533, 1/D2/560:564, 1/D2/577:579, 1/D2/1261:1262, 1/D2/2017:2018 | No text annotation | homologous J5_8B0X_005 J5_43153.6 | |
| J5_9TKR_006 | 1/D2/584:589, 1/D2/668:671, 1/D2/809:812, 1/D2/1195:1196, 1/D2/1250:1256 | No text annotation | homologous J5_8B0X_006 J5_74302.6 | |
| J5_9TKR_007 | 1/D2/1674:1682, 1/D2/1706:1707, 1/D2/1751:1752, 1/D2/1756:1764, 1/D2/1988:1990 | No text annotation | homologous J5_8B0X_007 J5_99177.4 | |
| J5_9TKR_008 | 1/D2/2057:2064, 1/D2/2446:2453, 1/D2/2500:2507, 1/D2/2582:2588, 1/D2/2606:2611 | No text annotation | ||
| J5_9TKR_009 | 1/D2/2074:2077, 1/D2/2243:2246, 1/D2/2258:2259, 1/D2/2281:2282, 1/D2/2427:2435 | No text annotation | homologous J5_8B0X_009 J5_39529.2 | |
| J6_9TKR_001 | 1/D2/45:46, 1/D2/179:183, 1/D2/214:224, 1/D2/231:235, 1/D2/262:266, 1/D2/426:433 | No text annotation | ||
| J6_9TKR_002 | 1/D2/2074:2077, 1/D2/2243:2246, 1/D2/2258:2259, 1/D2/2281:2284, 1/D2/2384:2395, 1/D2/2421:2435 | No text annotation | ||
| J7_9TKR_001 | 1/D2/8:15, 1/D2/525:531, 1/D2/2018:2023, 1/D2/2040:2043, 1/D2/2625:2630, 1/D2/2788:2789, 1/D2/2894:2895 | No text annotation | ||
| J7_9TKR_002 | 1/D2/817:822, 1/D2/835:838, 1/D2/940:946, 1/D2/971:976, 1/D2/987:991, 1/D2/1163:1164, 1/D2/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9TKR_012 | No text annotation | ||
| J3_9TKR_025 | No text annotation |
Coloring options: