HL_9TNL_079

3D structure

PDB id

9TNL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9TNL|1|a|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TNL_079 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1382

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.3

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9TNL|1|a|G|1910
9TNL|1|a|PSU|1911
9TNL|1|a|A|1912
9TNL|1|a|A|1913
9TNL|1|a|C|1914
9TNL|1|a|3TD|1915
9TNL|1|a|A|1916
9TNL|1|a|PSU|1917
9TNL|1|a|A|1918
9TNL|1|a|A|1919
9TNL|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain X

mRNA

Chain Y

Transfer RNA; tRNA