HL_9TT7_039
3D structure
- PDB id
- 9TT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome of WT EBV infected human B-cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 9TT7|1|L5|A|3862, 9TT7|1|L5|A|3863, 9TT7|1|L5|C|3864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TT7_039 not in the Motif Atlas
- Homologous match to HL_9H3G_054
- Geometric discrepancy: 0.0424
- The information below is about HL_9H3G_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9TT7|1|L5|G|3859
9TT7|1|L5|G|3860
9TT7|1|L5|G|3861
9TT7|1|L5|A|3862
9TT7|1|L5|A|3863
9TT7|1|L5|C|3864
9TT7|1|L5|G|3865
9TT7|1|L5|G|3866
9TT7|1|L5|G|3867
9TT7|1|L5|C|3868
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain Le
- 60S ribosomal protein L32
Coloring options: