HL_9TV2_013

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

9TV2|1|L5|C|1321

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_013 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.0578

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9TV2|1|L5|U|1313
9TV2|1|L5|C|1314
9TV2|1|L5|U|1315
9TV2|1|L5|U|1316
9TV2|1|L5|G|1317
9TV2|1|L5|1MA|1318
9TV2|1|L5|A2M|1319
9TV2|1|L5|A|1320
9TV2|1|L5|C|1321
9TV2|1|L5|A2M|1322

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain La

Large ribosomal subunit protein uL15

Chain Le

60S ribosomal protein L32