HL_9TV2_018

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9TV2|1|L5|A|1626, 9TV2|1|L5|G|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_018 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0311

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9TV2|1|L5|G|1623
9TV2|1|L5|C|1624
9TV2|1|L5|G|1625
9TV2|1|L5|A|1626
9TV2|1|L5|A|1627
9TV2|1|L5|A|1628
9TV2|1|L5|G|1629
9TV2|1|L5|A|1630
9TV2|1|L5|C|1631

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

Large ribosomal subunit protein eL37